Q8JJC6_ORYLA (Oryzias latipes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSORLG00000016263 T40238_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
RBM8A
M054_0.6 		Homo sapiens RYGCGCB RNAcompete
Ray et al.(2013)
RNCMPT00056 		0.915
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000020359 RRM 73 143

Links

Other RRM family RBPs
Other Oryzias latipes RBPs

63 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
RBM8A Gasterosteus aculeatus ENSGACG00000013157 I 0.972
RBM8A Takifugu rubripes ENSTRUG00000013173 I 0.944
AAH56659 Xenopus laevis AAH56659 I 0.930
AAH73361 Xenopus laevis AAH73361 I 0.930
AAG27092 Xenopus laevis AAG27092 I 0.930
Q9DF42 Xenopus laevis Q9DF42 I 0.930
RBM8A Macropus eugenii ENSMEUG00000016058 I 0.930
rbm8a Danio rerio ENSDARG00000016516 I 0.930
RBM8A Tetraodon nigroviridis ENSTNIG00000006869 I 0.930
Q6PH90 Xenopus laevis Q6PH90 I 0.930
Q6DTK7_HORSE Equus caballus ENSECAG00000022024 I 0.915
RBM8A Sus scrofa ENSSSCG00000006684 I 0.915
ENSETEG00000017932 Echinops telfairi ENSETEG00000017932 I 0.915
RBM8A Felis catus ENSFCAG00000005412 I 0.915
RBM8A Homo sapiens ENSG00000131795 D 0.915
RBM8A Sorex araneus ENSSARG00000013289 I 0.915
Rbm8a Rattus norvegicus ENSRNOG00000021215 I 0.915
RBM8A Canis familiaris ENSCAFG00000023172 I 0.915
LOC100399389 Callithrix jacchus ENSCJAG00000002209 I 0.915
RBM8A Cavia porcellus ENSCPOG00000022453 I 0.915
RBM8A Pteropus vampyrus ENSPVAG00000014471 I 0.915
RBM8A_BOVIN Bos taurus ENSBTAG00000008369 I 0.915
RBM8A Pan troglodytes ENSPTRG00000001201 I 0.915
RBM8A Macaca mulatta ENSMMUG00000016051 I 0.915
RBM8A Gorilla gorilla ENSGGOG00000005422 I 0.915
RBM8A Oryctolagus cuniculus ENSOCUG00000025693 I 0.915
Rbm8a Mus musculus ENSMUSG00000038374 I 0.915
RBM8A Otolemur garnettii ENSOGAG00000000202 I 0.915
RBM8A Tursiops truncatus ENSTTRG00000009081 I 0.915
Ame_R013073 Ailuropoda melanoleuca Ame_R013073 I 0.915
ENSLAFG00000021886 Loxodonta africana ENSLAFG00000021886 I 0.915
ENSPPYG00000000929 Pongo pygmaeus ENSPPYG00000000929 I 0.915
B020018G12Rik Mus musculus ENSMUSG00000078184 I 0.915
RBM8A Monodelphis domestica ENSMODG00000018752 I 0.901
ENSPCAG00000002146 Procavia capensis ENSPCAG00000002146 I 0.901
B5FZD1_TAEGU Taeniopygia guttata ENSTGUG00000004447 I 0.887
RBM8A Spermophilus tridecemlineatus ENSSTOG00000013917 I 0.873
estExt_Genewise1.C_210127 Daphnia pulex estExt_Genewise1.C_210127 I 0.789
nasonia_NCBI_hmm460663 Nasonia vitripennis nasonia_NCBI_hmm460663 I 0.761
ENSCSAVG00000005685 Ciona savignyi ENSCSAVG00000005685 I 0.746
amel4_ncbi_hmm2170 Apis mellifera amel4_ncbi_hmm2170 I 0.746
e_gw.589.3.1 Branchiostoma floridae e_gw.589.3.1 I 0.746
estExt_fgenesh2_pg.C_4600002 Branchiostoma floridae estExt_fgenesh2_pg.C_4600002 I 0.746
CBN21335 Caenorhabditis brenneri CBN21335 N 0.732
e_gw1.53.304.1 Lottia gigantea e_gw1.53.304.1 I 0.718
Ppa-rnp-4 Pristionchus pacificus PPA11325 N 0.718
Smp_002550 Schistosoma mansoni Smp_002550 I 0.718
Sjc_0039250 Schistosoma japonicum Sjc_0039250 I 0.718
XP_792124.1 Strongylocentrotus purpuratus XP_792124.1 I 0.718
XP_001194199.1 Strongylocentrotus purpuratus XP_001194199.1 I 0.718
CRE20368 Caenorhabditis remanei CRE20368 I 0.718
DGIL_AUG5s13034g4t1 Acyrtosiphon pisum DGIL_AUG5s13034g4t1 I 0.718
CBG18074 Caenorhabditis briggsae CBG18074 I 0.718
CJA17011 Caenorhabditis japonica CJA17011 I 0.718
DGIL_AUG5s25g7t1 Acyrtosiphon pisum DGIL_AUG5s25g7t1 I 0.718
PHUM390470 Pediculus humanus PHUM390470 N 0.704
rnp-4 Caenorhabditis elegans R07E5.14 N 0.704
gww1.22.130.1 Laccaria bicolor gww1.22.130.1 I 0.704
fgenesh1_pm.C_scaffold_6000172 Pleurotus ostreatus fgenesh1_pm.C_scaffold_6000172 I 0.704
estExt_fgenesh2_kg.C_60460 Agaricus bisporus estExt_fgenesh2_kg.C_60460 I 0.704
estExt_fgenesh2_kg.C_130331 Serpula lacrymans estExt_fgenesh2_kg.C_130331 I 0.704
ENSCING00000004877 Ciona intestinalis ENSCING00000004877 I 0.704
AAEL006748 Aedes aegypti AAEL006748 N 0.704