CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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SB05G026786
(
Sorghum bicolor
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
Sb05g026786
T46011_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Sb05g026786.1
RRM
22
47
VYVGGLPPDANEQTVAVYFNQIMAAI
Sb05g026786.1
RRM
54
97
PGDAVLNVYINHDKKFASVEMRSVEEASNAMALDGIMFEGVPVK
Sb05g026786.1
RRM
141
211
IFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDKETGNSKGYAFCDYQDLTVTDIACAALNGIKMGDKILT
Links
Other
RRM
family RBPs
Other
Sorghum bicolor
RBPs
15 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GRMZM2G057450
Zea mays
GRMZM2G057450
N
0.930
BRADI4G12260
Brachypodium distachyon
BRADI4G12260
N
0.923
LOC_Os11g41820
Oryza sativa
LOC_Os11g41820
N
0.923
GRMZM2G093256
Zea mays
GRMZM2G093256
N
0.901
Sb05g025260
Sorghum bicolor
Sb05g025260
N
0.901
GRMZM2G022763
Zea mays
GRMZM2G022763
N
0.887
29646.m001075
Ricinus communis
29646.m001075
N
0.866
PK22404.1
Cannabis sativa
PK22404.1
N
0.866
mgf002992m
Mimulus guttatus
mgf002992m
N
0.866
BRADI4G38060
Brachypodium distachyon
BRADI4G38060
N
0.851
Medtr3g013160
Medicago truncatula
Medtr3g013160
N
0.839
ATU2AF65A
Arabidopsis thaliana
AT4G36690-TAIR-G
N
0.839
chr3.CM0129.190.nd
Lotus japonicus
chr3.CM0129.190.nd
N
0.817
GSVIVG00007437001
Vitis vinifera
GSVIVG00007437001
N
0.801
SB05G026783
Sorghum bicolor
Sb05g026783
N
0.720