CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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SB06G001100
(
Sorghum bicolor
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
Sb06g001100
T46013_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Sb06g001100.1
RRM
4
64
VFVGNLDYDTRHSELDQLFYRYGRVERIDMKSGFAFVYFEDERDGNDAIRALDGYPFGPGR
Sb06g001100.1
RRM
95
158
LFVINFDPINTRVSDIERHFAPFGNLSSVRIRKNFAFVQFETLEEARKALDATHATTLLDRVIS
Links
Other
RRM
family RBPs
Other
Sorghum bicolor
RBPs
7 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GRMZM2G021223
Zea mays
GRMZM2G021223
N
0.936
GRMZM2G052166
Zea mays
GRMZM2G052166
N
0.936
BRADI5G01430
Brachypodium distachyon
BRADI5G01430
N
0.904
BGIOSIBCE013939
Oryza indica
BGIOSIBCE013939
N
0.880
LOC_Os04g02870
Oryza sativa
LOC_Os04g02870
N
0.880
Cucsa.259460
Cucumis sativus
Cucsa.259460
N
0.728
Medtr8g029490
Medicago truncatula
Medtr8g029490
N
0.706