Medtr8g146650 (Medicago truncatula)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Medtr8g146650 T54619_0.6 PlantGDB (2010-Oct-15)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Medtr8g146650.1 RRM 76 143
Medtr8g146650.1 RRM 169 240
Medtr8g146650.1 RRM 276 340
Medtr8g146650.2 RRM 76 143
Medtr8g146650.2 RRM 169 240
Medtr8g146650.3 RRM 76 143
Medtr8g146650.3 RRM 169 240

Links

Other RRM family RBPs
Other Medicago truncatula RBPs

45 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
chr4.CM1334.150.nc Lotus japonicus chr4.CM1334.150.nc N 0.893
Glyma15g11380.1 Glycine max Glyma15g11380.1 I 0.888
Glyma13g27570.1 Glycine max Glyma13g27570.1 I 0.888
Glyma17g01800.1 Glycine max Glyma17g01800.1 I 0.878
Glyma07g38940.1 Glycine max Glyma07g38940.1 I 0.878
chr6.CM0139.780.nd Lotus japonicus chr6.CM0139.780.nd I 0.873
Cucsa.085910 Cucumis sativus Cucsa.085910 I 0.830
MDP0000294628 Malus x domestica MDP0000294628 I 0.830
Cucsa.085920 Cucumis sativus Cucsa.085920 I 0.820
PK10695.1 Cannabis sativa PK10695.1 I 0.816
ppa006617m Prunus persica ppa006617m N 0.791
B9H1C9_POPTR Populus trichocarpa POPTR_0004s01690 N 0.763
mgf010468m Mimulus guttatus mgf010468m I 0.760
29842.m003612 Ricinus communis 29842.m003612 N 0.758
XM_002889837.1 Arabidopsis lyrata fgenesh2_kg.1__1255__AT1G11650.2 N 0.754
ATRBP45B Arabidopsis thaliana AT1G11650-TAIR-G N 0.754
mgf014417m Mimulus guttatus mgf014417m N 0.740
GRMZM2G426591 Zea mays GRMZM2G426591 N 0.736
29666.m001436 Ricinus communis 29666.m001436 I 0.731
BGIOSIBSE038779 Oryza indica BGIOSIBSE038779 N 0.729
BRADI3G15180 Brachypodium distachyon BRADI3G15180 N 0.729
Cucsa.085240 Cucumis sativus Cucsa.085240 N 0.727
cassava37002.valid.m1 Manihot esculenta cassava37002.valid.m1 I 0.726
cassava37003.valid.m1 Manihot esculenta cassava37003.valid.m1 I 0.726
cassava37001.valid.m1 Manihot esculenta cassava37001.valid.m1 I 0.726
cassava37000.valid.m1 Manihot esculenta cassava37000.valid.m1 I 0.726
cassava36999.valid.m1 Manihot esculenta cassava36999.valid.m1 I 0.726
LOC_Os08g09100 Oryza sativa LOC_Os08g09100 N 0.725
cassava44220.valid.m1 Manihot esculenta cassava44220.valid.m1 N 0.725
cassava44219.valid.m1 Manihot esculenta cassava44219.valid.m1 N 0.725
PK15181.1 Cannabis sativa PK15181.1 N 0.720
Sb07g005360 Sorghum bicolor Sb07g005360 N 0.713
POPTR_0011s14150 Populus trichocarpa POPTR_0011s14150 N 0.713
A9PGI8_POPTR Populus trichocarpa POPTR_0001s45000 I 0.712
cassava35906.valid.m1 Manihot esculenta cassava35906.valid.m1 I 0.712
SB01G016170 Sorghum bicolor Sb01g016170 N 0.709
MDP0000223369 Malus x domestica MDP0000223369 N 0.707
MDP0000614064 Malus x domestica MDP0000614064 N 0.707
LOC_Os04g53440 Oryza sativa LOC_Os04g53440 N 0.707
BGIOSIBCE016680 Oryza indica BGIOSIBCE016680 N 0.707
ATRBP45C Arabidopsis thaliana AT4G27000-TAIR-G N 0.705
ppa006577m Prunus persica ppa006577m I 0.702
GRMZM2G012628 Zea mays GRMZM2G012628 N 0.702
Glyma07g33300.1 Glycine max Glyma07g33300.1 I 0.700