CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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HCAG_05763
(
Histoplasma capsulatum
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
HCAG_05763
T29481_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
HCAG_05763T0
RRM
123
202
VYVIGLNPTIRDESQLLQTLRGDQYFGQYGDIEKIVVSKAKPGGNPNQGIGVYVTFARKADAATCIAAVDGSPNGDRVLR
Links
Other
RRM
family RBPs
Other
Histoplasma capsulatum
RBPs
25 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
BDBG_02075
Blastomyces dermatitidis
BDBG_02075
N
1.000
PABG_01879
Paracoccidioides brasiliensis
PABG_01879
N
0.951
ATEG_06631
Aspergillus terreus
CADATEAG00009109
N
0.938
NFIA_054470
Neosartorya fischeri
CADNFIAG00005274
N
0.925
CIMG_01358
Coccidioides immitis
CIMG_01358
N
0.925
AFUA_6G08820
Aspergillus fumigatus
CADAFUAG00001582
N
0.925
An11g06210
Aspergillus niger
CADANGAG00008954
N
0.925
UREG_01281
Uncinocarpus reesii
UREG_01281
N
0.914
TRV_07199
Trichophyton verrucosum
TRV_07199
N
0.914
ACLA_083590
Aspergillus clavatus
CADACLAG00008130
N
0.912
Pc12g08810
Penicillium chrysogenum
Pc12g08810
N
0.900
ANIA_10228
Aspergillus nidulans
CADANIAG00008371
N
0.900
fgenesh1_pg.00118_#_293
Aspergillus carbonarius
fgenesh1_pg.00118_#_293
N
0.889
CPSG_01825
Coccidioides posadasii
CPSG_01825
N
0.889
PMAA_064610
Penicillium marneffei
PMAA_064610
N
0.887
AFLA_128590
Aspergillus flavus
CADAFLAG00009917
N
0.840
AO090001000554
Aspergillus oryzae
CADAORAG00000508
N
0.840
MGYG_01410
Microsporum gypseum
MGYG_01410
N
0.761
ARB_01970
Arthroderma benhamiae
ARB_01970
N
0.761
TERG_00095
Trichophyton rubrum
TERG_00095
N
0.761
TESG_08570
Trichophyton tonsurans
TESG_08570
N
0.761
TEQG_06760
Trichophyton equinum
TEQG_06760
N
0.761
MCYG_00552
Microsporum canis
MCYG_00552
N
0.761
PTRG_01476
Pyrenophora tritici repentis
PTRG_01476
N
0.700
e_gw1.11.630.1
Cochliobolus heterostrophus C5
e_gw1.11.630.1
N
0.700