estExt_fgenesh2_pg.C_sca_50258 (Lottia gigantea)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 estExt_fgenesh2_pg.C_sca_50258 T50917_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_fgenesh2_pg.C_sca_50258 RRM 225 295

Links

Other RRM family RBPs
Other Lottia gigantea RBPs

81 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SAFB2 Cavia porcellus ENSCPOG00000011394 N 0.859
ENSOANG00000013644 Ornithorhynchus anatinus ENSOANG00000013644 N 0.845
SAFB2 Procavia capensis ENSPCAG00000006352 N 0.845
SAFB2 Sorex araneus ENSSARG00000000649 N 0.845
ENSMGAG00000001051 Meleagris gallopavo ENSMGAG00000001051 N 0.831
SAFB2 Myotis lucifugus ENSMLUG00000001050 N 0.831
SAFB2 Echinops telfairi ENSETEG00000016756 N 0.831
SAFB2 Homo sapiens ENSG00000130254 N 0.831
SAFB Loxodonta africana ENSLAFG00000003840 N 0.831
SAFB2 Macaca mulatta ENSMMUG00000017968 N 0.831
SAFB2 Gorilla gorilla ENSGGOG00000015093 N 0.831
SAFB2 Gallus gallus ENSGALG00000001948 N 0.831
SAFB2 Oryctolagus cuniculus ENSOCUG00000001592 N 0.831
SAFB2 Spermophilus tridecemlineatus ENSSTOG00000002758 N 0.831
SAFB-1 Taeniopygia guttata ENSTGUG00000000489 N 0.831
SAFB2 Tursiops truncatus ENSTTRG00000013585 N 0.831
ENSSSCG00000013523 Sus scrofa ENSSSCG00000013523 N 0.831
SAFB2 Pan troglodytes ENSPTRG00000010334 N 0.831
LOC100064922 Equus caballus ENSECAG00000018978 N 0.831
SAFB2 Otolemur garnettii ENSOGAG00000006855 N 0.831
ENSPPYG00000009427 Pongo pygmaeus ENSPPYG00000009427 N 0.831
SAFB2 Monodelphis domestica ENSMODG00000001178 N 0.831
SAFB2 Loxodonta africana ENSLAFG00000003836 N 0.831
SAFB2 Bos taurus ENSBTAG00000001790 N 0.831
SAFB2 Callithrix jacchus ENSCJAG00000017205 N 0.831
SAFB Cavia porcellus ENSCPOG00000026322 N 0.831
estExt_fgenesh2_pg.C_3630023 Branchiostoma floridae estExt_fgenesh2_pg.C_3630023 N 0.817
safb Danio rerio ENSDARG00000020467 N 0.817
SAFB Vicugna pacos ENSVPAG00000012043 N 0.817
SAFB Macaca mulatta ENSMMUG00000017970 N 0.817
ENSBTAG00000007875 Bos taurus ENSBTAG00000007875 N 0.817
SAFB Myotis lucifugus ENSMLUG00000001081 N 0.817
SAFB Tursiops truncatus ENSTTRG00000013588 N 0.817
SAFB Tarsius syrichta ENSTSYG00000001851 N 0.817
Ame_R016389 Ailuropoda melanoleuca Ame_R016389 N 0.817
SAFB Sorex araneus ENSSARG00000010475 N 0.817
SAFB Pteropus vampyrus ENSPVAG00000004913 N 0.817
ENSPPYG00000009428 Pongo pygmaeus ENSPPYG00000009428 N 0.817
estExt_fgenesh2_pg.C_4200008 Branchiostoma floridae estExt_fgenesh2_pg.C_4200008 N 0.817
ENSTNIG00000015470 Tetraodon nigroviridis ENSTNIG00000015470 N 0.817
SAFB Oryctolagus cuniculus ENSOCUG00000014628 N 0.817
SAFB Microcebus murinus ENSMICG00000008739 N 0.817
SAFB Homo sapiens ENSG00000160633 N 0.817
SAFB2 Felis catus ENSFCAG00000011834 N 0.817
LOC100064953 Equus caballus ENSECAG00000018659 N 0.817
SAFB Callithrix jacchus ENSCJAG00000017081 N 0.817
SAFB Echinops telfairi ENSETEG00000018679 N 0.817
SAFB Felis catus ENSFCAG00000011835 N 0.817
Safb Dipodomys ordii ENSDORG00000016200 N 0.817
SAFB2 Canis familiaris ENSCAFG00000018814 N 0.817
SAFB Dasypus novemcinctus ENSDNOG00000015746 N 0.817
A7E314_BOVIN Bos taurus ENSBTAG00000035585 N 0.817
SAFB Canis familiaris ENSCAFG00000018803 N 0.817
fgenesh1_pm.C_scaffold_151000005 Capitella teleta fgenesh1_pm.C_scaffold_151000005 N 0.817
SAFB Gorilla gorilla ENSGGOG00000015109 N 0.817
SAFB Takifugu rubripes ENSTRUG00000003567 N 0.803
SAFB Pan troglodytes ENSPTRG00000010335 N 0.803
SAFB-2 Taeniopygia guttata ENSTGUG00000000502 N 0.803
Safb2 Dipodomys ordii ENSDORG00000016199 N 0.803
ENSACAG00000016893 Anolis carolinensis ENSACAG00000016893 N 0.803
SAFB2 Gallus gallus ENSGALG00000013365 N 0.803
ENSMGAG00000001101 Meleagris gallopavo ENSMGAG00000001101 N 0.803
SAFB Gasterosteus aculeatus ENSGACG00000011385 N 0.803
Safb Mus musculus ENSMUSG00000071054 N 0.803
Ame_R016388 Ailuropoda melanoleuca Ame_R016388 N 0.803
SAFB2 Macropus eugenii ENSMEUG00000002456 N 0.803
SAFB Ochotona princeps ENSOPRG00000011561 N 0.803
amel4_ncbi_hmm13354 Apis mellifera amel4_ncbi_hmm13354 N 0.789
ENSMODG00000001236 Monodelphis domestica ENSMODG00000001236 N 0.789
ENSACAG00000016928 Anolis carolinensis ENSACAG00000016928 N 0.789
LOC787645 Bos taurus ENSBTAG00000035584 N 0.789
Safb2 Mus musculus ENSMUSG00000042625 N 0.789
SAFB Oryzias latipes ENSORLG00000016989 N 0.789
AAEL001352 Aedes aegypti AAEL001352 N 0.746
CPIJ012814 Culex quinquefasciatus CPIJ012814 N 0.746
CpipJ_CPIJ012814 Culex pipiens CpipJ_CPIJ012814 N 0.746
DGIL_AUG5s7140g4t1 Acyrtosiphon pisum DGIL_AUG5s7140g4t1 N 0.732
168846 Helobdella robusta 168846 N 0.732
nasonia_NCBI_hmm598374 Nasonia vitripennis nasonia_NCBI_hmm598374 N 0.732
AGAP001298 Anopheles gambiae AGAP001298 N 0.718
DGIL_AUG5s8592g2t1 Acyrtosiphon pisum DGIL_AUG5s8592g2t1 N 0.718