CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
18402_YNL251C
(
Saccharomyces paradoxus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
18402_YNL251C
T55140_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
18402_YNL251C
RRM
343
401
LFIGGVPLNMKEWDLANVLKPFAEVQSVILNNSRKHAFVKVYSRHEAENVLQNFNKDGA
Links
Other
RRM
family RBPs
Other
Saccharomyces paradoxus
RBPs
11 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
NRD1
Saccharomyces cerevisiae
YNL251C
N
1.000
19777_Multiple
Saccharomyces bayanus
19777_Multiple
N
0.949
17978_YNL251C
Saccharomyces mikatae
17978_YNL251C
N
0.919
A7TF47_VANPO
Vanderwaltozyma polyspora
A7TF47_VANPO
N
0.814
Kwal_13522
Kluyveromyces waltii
Kwal_13522
N
0.780
KLTH0F02992g
Kluyveromyces thermotolerans
KLTH0F02992g
N
0.780
CLUG_00870
Candida lusitaniae
CLUG_00870
N
0.746
DEHA0E12364g
Debaryomyces hansenii
DEHA0E12364g
N
0.733
Cd36_51490
Candida dubliniensis
Cd36_51490
N
0.712
orf19.581
Candida albicans
orf19.581
N
0.712
CTRG_05353
Candida tropicalis
CTRG_05353
N
0.712