chr5.LjT18P14.100.nd (Lotus japonicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 chr5.LjT18P14.100.nd T55904_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
chr5.LjT18P14.100.nd RRM 64 129

Links

Other RRM family RBPs
Other Lotus japonicus RBPs

32 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava22670.valid.m1 Manihot esculenta cassava22670.valid.m1 N 0.881
Glyma20g36570.1 Glycine max Glyma20g36570.1 I 0.819
Medtr1g093610 Medicago truncatula Medtr1g093610 I 0.806
B9IPA5_POPTR Populus trichocarpa POPTR_0019s03570 I 0.806
29680.m001693 Ricinus communis 29680.m001693 I 0.806
cassava22669.valid.m1 Manihot esculenta cassava22669.valid.m1 I 0.806
Glyma10g30900.1 Glycine max Glyma10g30900.1 I 0.806
Glyma11g01300.1 Glycine max Glyma11g01300.1 I 0.806
PK16312.1 Cannabis sativa PK16312.1 I 0.806
PDK_20s1301681g005 Phoenix dactylifera PDK_20s1301681g005 I 0.792
Sb02g038420 Sorghum bicolor Sb02g038420 I 0.792
ppa010477m Prunus persica ppa010477m I 0.792
MDP0000283678 Malus x domestica MDP0000283678 I 0.792
MDP0000320908 Malus x domestica MDP0000320908 I 0.792
Cucsa.178480 Cucumis sativus Cucsa.178480 I 0.792
GRMZM2G068255 Zea mays GRMZM2G068255 I 0.792
B9I5N8_POPTR Populus trichocarpa POPTR_0013s04390 I 0.792
LOC_Os08g45240 Oryza sativa LOC_Os08g45240 I 0.789
GSVIVG00016104001 Vitis vinifera GSVIVG00016104001 I 0.778
BRADI3G12840 Brachypodium distachyon BRADI3G12840 I 0.778
GSVIVG00023509001 Vitis vinifera GSVIVG00023509001 I 0.778
PDK_20s1323974g003 Phoenix dactylifera PDK_20s1323974g003 I 0.778
mgf021739m Mimulus guttatus mgf021739m I 0.778
BGIOSIBCE028936 Oryza indica BGIOSIBCE028936 I 0.778
LjSGA_021949.1 Lotus japonicus LjSGA_021949.1 I 0.764
XM_002884402.1 Arabidopsis lyrata fgenesh2_kg.3__407__AT3G04500.1 I 0.764
AT3G04500 Arabidopsis thaliana AT3G04500-TAIR-G I 0.764
BRADI3G49130 Brachypodium distachyon BRADI3G49130 I 0.736
e_gw1.156.67.1 Physcomitrella patens e_gw1.156.67.1 I 0.736
BGIOSIBCE007866 Oryza indica BGIOSIBCE007866 I 0.722
gw1.0.1780.1 Selaginella moellendorfii gw1.0.1780.1 I 0.722
LOC_Os02g40900 Oryza sativa LOC_Os02g40900 I 0.708