CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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gw1.0.1780.1
(
Selaginella moellendorfii
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
gw1.0.1780.1
T53029_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
RBM42
M142_0.6
Homo sapiens
AACUAMG
RNAcompete
Ray et al.(2013)
RNCMPT00151
0.708
CG2931
M138_0.6
Drosophila melanogaster
DACUAAG
RNAcompete
Ray et al.(2013)
RNCMPT00147
0.708
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
gw1.0.1780.1
RRM
65
136
LFCGDLGNEVNDEVLTKAFTRFPSFNMARVVRDKRTGKTKGYGFVSFSSAADLAFAMKEMNGKFYVGNRPIK
Links
Other
RRM
family RBPs
Other
Selaginella moellendorfii
RBPs
77 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Cucsa.178480
Cucumis sativus
Cucsa.178480
I
0.861
cassava22669.valid.m1
Manihot esculenta
cassava22669.valid.m1
I
0.861
Sb02g038420
Sorghum bicolor
Sb02g038420
I
0.861
LOC_Os08g45240
Oryza sativa
LOC_Os08g45240
I
0.861
BGIOSIBCE028936
Oryza indica
BGIOSIBCE028936
I
0.861
e_gw1.156.67.1
Physcomitrella patens
e_gw1.156.67.1
I
0.861
Medtr1g093610
Medicago truncatula
Medtr1g093610
I
0.861
GRMZM2G068255
Zea mays
GRMZM2G068255
I
0.861
Glyma10g30900.1
Glycine max
Glyma10g30900.1
I
0.847
mgf021739m
Mimulus guttatus
mgf021739m
I
0.847
XM_002884402.1
Arabidopsis lyrata
fgenesh2_kg.3__407__AT3G04500.1
I
0.847
BRADI3G12840
Brachypodium distachyon
BRADI3G12840
I
0.847
29680.m001693
Ricinus communis
29680.m001693
I
0.847
GSVIVG00016104001
Vitis vinifera
GSVIVG00016104001
I
0.833
GSVIVG00023509001
Vitis vinifera
GSVIVG00023509001
I
0.833
MDP0000320908
Malus x domestica
MDP0000320908
I
0.833
Glyma20g36570.1
Glycine max
Glyma20g36570.1
I
0.833
MDP0000283678
Malus x domestica
MDP0000283678
I
0.833
ppa010477m
Prunus persica
ppa010477m
I
0.833
Glyma11g01300.1
Glycine max
Glyma11g01300.1
I
0.833
PK16312.1
Cannabis sativa
PK16312.1
I
0.833
B9IPA5_POPTR
Populus trichocarpa
POPTR_0019s03570
I
0.819
LjSGA_021949.1
Lotus japonicus
LjSGA_021949.1
I
0.819
PDK_20s1323974g003
Phoenix dactylifera
PDK_20s1323974g003
I
0.819
AT3G04500
Arabidopsis thaliana
AT3G04500-TAIR-G
I
0.819
PDK_20s1301681g005
Phoenix dactylifera
PDK_20s1301681g005
I
0.819
BRADI3G49130
Brachypodium distachyon
BRADI3G49130
I
0.819
BGIOSIBCE007866
Oryza indica
BGIOSIBCE007866
I
0.806
B9I5N8_POPTR
Populus trichocarpa
POPTR_0013s04390
I
0.806
LOC_Os02g40900
Oryza sativa
LOC_Os02g40900
I
0.792
PDK_20s1329112g001
Phoenix dactylifera
PDK_20s1329112g001
N
0.792
GRMZM2G125529
Zea mays
GRMZM2G125529
I
0.778
SB04G026430
Sorghum bicolor
Sb04g026430
I
0.764
mgf018525m
Mimulus guttatus
mgf018525m
I
0.736
cassava22670.valid.m1
Manihot esculenta
cassava22670.valid.m1
N
0.736
chr5.LjT18P14.100.nd
Lotus japonicus
chr5.LjT18P14.100.nd
N
0.722
mgf008981m
Mimulus guttatus
mgf008981m
I
0.712
GF11626
Drosophila ananassae
FBgn0088666
I
0.708
RBM42
Takifugu rubripes
ENSTRUG00000004663
I
0.708
RBM42
Tarsius syrichta
ENSTSYG00000014688
I
0.708
CG2931
Drosophila melanogaster
FBgn0037342
D
0.708
GI23084
Drosophila mojavensis
FBgn0145811
I
0.708
TGGT1_017860
Toxoplasma gondii
TGGT1_017860
N
0.708
RBM42
Tetraodon nigroviridis
ENSTNIG00000011669
I
0.708
TGVEG_046310
Toxoplasma gondii
TGVEG_046310
N
0.708
TGME49_003080
Toxoplasma gondii
TGME49_003080
N
0.708
GE24162
Drosophila yakuba
FBgn0241294
I
0.708
GM10617
Drosophila sechellia
FBgn0165563
I
0.708
RBM42
Otolemur garnettii
ENSOGAG00000004144
I
0.708
RBM42
Homo sapiens
ENSG00000126254
D
0.708
RBM42
Erinaceus europaeus
ENSEEUG00000004841
I
0.708
RBM42
Gasterosteus aculeatus
ENSGACG00000004170
I
0.708
RBM42
Gorilla gorilla
ENSGGOG00000009972
I
0.708
RBM42
Microcebus murinus
ENSMICG00000009880
I
0.708
ENSMEUG00000016300
Macropus eugenii
ENSMEUG00000016300
I
0.708
LOC100051102
Equus caballus
ENSECAG00000018215
I
0.708
RBM42
Cavia porcellus
ENSCPOG00000012365
I
0.708
SPPG_03010
Spizellomyces punctatus
SPPG_03010
I
0.708
Ame_R009099
Ailuropoda melanoleuca
Ame_R009099
I
0.708
RBM42_BOVIN
Bos taurus
ENSBTAG00000013440
I
0.708
RBM42
Canis familiaris
ENSCAFG00000006925
I
0.708
RBM42
Callithrix jacchus
ENSCJAG00000010220
I
0.708
RBM42
Myotis lucifugus
ENSMLUG00000011334
I
0.708
RBM42
Macaca mulatta
ENSMMUG00000018954
I
0.708
RBM42
Pteropus vampyrus
ENSPVAG00000012815
I
0.708
RBM42
Pan troglodytes
ENSPTRG00000010852
I
0.708
Rbm42
Rattus norvegicus
ENSRNOG00000024278
I
0.708
RBM42
Sorex araneus
ENSSARG00000010724
I
0.708
RBM42
Sus scrofa
ENSSSCG00000002905
I
0.708
ENSPPYG00000009871
Pongo pygmaeus
ENSPPYG00000009871
I
0.708
RBM42
Procavia capensis
ENSPCAG00000013053
I
0.708
Rbm42
Mus musculus
ENSMUSG00000036733
I
0.708
RBM42
Monodelphis domestica
ENSMODG00000013957
I
0.708
RBM42
Oryctolagus cuniculus
ENSOCUG00000003337
I
0.708
RBM42
Ochotona princeps
ENSOPRG00000001229
I
0.708
RBM42
Oryzias latipes
ENSORLG00000003387
I
0.708
RBM42
Spermophilus tridecemlineatus
ENSSTOG00000013050
I
0.708