CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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BRADI3G49130
(
Brachypodium distachyon
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
BRADI3G49130
T33262_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
ENSXETG00000017599
M237_0.6
Xenopus tropicalis
WACUAC
RNAcompete
Ray et al.(2013)
RNCMPT00282
0.732
RBM42
M142_0.6
Homo sapiens
AACUAMG
RNAcompete
Ray et al.(2013)
RNCMPT00151
0.732
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
BRADI3G49130.1
RRM
133
203
LFCGDLGNEVNDDVLTKAFSKYPSFNMARVIRDKSTGKTKGYGFVSFANASDLAAALKEMNGKYVGNRPIK
Links
Other
RRM
family RBPs
Other
Brachypodium distachyon
RBPs
82 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
BGIOSIBCE007866
Oryza indica
BGIOSIBCE007866
I
0.972
LOC_Os02g40900
Oryza sativa
LOC_Os02g40900
I
0.958
SB04G026430
Sorghum bicolor
Sb04g026430
I
0.915
GRMZM2G125529
Zea mays
GRMZM2G125529
I
0.915
cassava22669.valid.m1
Manihot esculenta
cassava22669.valid.m1
I
0.901
29680.m001693
Ricinus communis
29680.m001693
I
0.901
Glyma10g30900.1
Glycine max
Glyma10g30900.1
I
0.901
Glyma20g36570.1
Glycine max
Glyma20g36570.1
I
0.901
MDP0000283678
Malus x domestica
MDP0000283678
I
0.887
ppa010477m
Prunus persica
ppa010477m
I
0.887
MDP0000320908
Malus x domestica
MDP0000320908
I
0.887
PK16312.1
Cannabis sativa
PK16312.1
I
0.887
PDK_20s1301681g005
Phoenix dactylifera
PDK_20s1301681g005
I
0.887
B9IPA5_POPTR
Populus trichocarpa
POPTR_0019s03570
I
0.873
Cucsa.178480
Cucumis sativus
Cucsa.178480
I
0.873
GSVIVG00016104001
Vitis vinifera
GSVIVG00016104001
I
0.873
GRMZM2G068255
Zea mays
GRMZM2G068255
I
0.873
PDK_20s1323974g003
Phoenix dactylifera
PDK_20s1323974g003
I
0.873
Medtr1g093610
Medicago truncatula
Medtr1g093610
I
0.873
Sb02g038420
Sorghum bicolor
Sb02g038420
I
0.873
mgf021739m
Mimulus guttatus
mgf021739m
I
0.859
B9I5N8_POPTR
Populus trichocarpa
POPTR_0013s04390
I
0.859
LOC_Os08g45240
Oryza sativa
LOC_Os08g45240
I
0.859
GSVIVG00023509001
Vitis vinifera
GSVIVG00023509001
I
0.859
Glyma11g01300.1
Glycine max
Glyma11g01300.1
I
0.859
AT3G04500
Arabidopsis thaliana
AT3G04500-TAIR-G
I
0.859
BRADI3G12840
Brachypodium distachyon
BRADI3G12840
I
0.859
BGIOSIBCE028936
Oryza indica
BGIOSIBCE028936
I
0.859
e_gw1.156.67.1
Physcomitrella patens
e_gw1.156.67.1
I
0.859
XM_002884402.1
Arabidopsis lyrata
fgenesh2_kg.3__407__AT3G04500.1
I
0.859
LjSGA_021949.1
Lotus japonicus
LjSGA_021949.1
I
0.845
PDK_20s1329112g001
Phoenix dactylifera
PDK_20s1329112g001
N
0.831
gw1.0.1780.1
Selaginella moellendorfii
gw1.0.1780.1
I
0.819
mgf008981m
Mimulus guttatus
mgf008981m
I
0.778
mgf018525m
Mimulus guttatus
mgf018525m
I
0.775
cassava22670.valid.m1
Manihot esculenta
cassava22670.valid.m1
N
0.750
estExt_fgenesh2_pg.C_360096
Branchiostoma floridae
estExt_fgenesh2_pg.C_360096
I
0.746
SPPG_03010
Spizellomyces punctatus
SPPG_03010
I
0.746
estExt_fgenesh2_pg.C_7640002
Branchiostoma floridae
estExt_fgenesh2_pg.C_7640002
I
0.746
chr5.LjT18P14.100.nd
Lotus japonicus
chr5.LjT18P14.100.nd
N
0.736
RBM42
Microcebus murinus
ENSMICG00000009880
I
0.732
RBM42
Canis familiaris
ENSCAFG00000006925
I
0.732
RBM42_BOVIN
Bos taurus
ENSBTAG00000013440
I
0.732
ENSMEUG00000016300
Macropus eugenii
ENSMEUG00000016300
I
0.732
RBM42
Homo sapiens
ENSG00000126254
D
0.732
RBM42
Callithrix jacchus
ENSCJAG00000010220
I
0.732
RBM42
Erinaceus europaeus
ENSEEUG00000004841
I
0.732
LOC100051102
Equus caballus
ENSECAG00000018215
I
0.732
A2VDB3
Xenopus laevis
A2VDB3
I
0.732
AAI29698
Xenopus laevis
AAI29698
I
0.732
RBM42
Cavia porcellus
ENSCPOG00000012365
I
0.732
Ame_R009099
Ailuropoda melanoleuca
Ame_R009099
I
0.732
RBM42
Gorilla gorilla
ENSGGOG00000009972
I
0.732
RBM42
Myotis lucifugus
ENSMLUG00000011334
I
0.732
RBM42
Sus scrofa
ENSSSCG00000002905
I
0.732
RBM42
Spermophilus tridecemlineatus
ENSSTOG00000013050
I
0.732
RBM42
Tarsius syrichta
ENSTSYG00000014688
I
0.732
ENSXETG00000017599
Xenopus tropicalis
ENSXETG00000017599
D
0.732
RBM42
Sorex araneus
ENSSARG00000010724
I
0.732
Rbm42
Rattus norvegicus
ENSRNOG00000024278
I
0.732
RBM42
Procavia capensis
ENSPCAG00000013053
I
0.732
ENSPPYG00000009871
Pongo pygmaeus
ENSPPYG00000009871
I
0.732
RBM42
Pan troglodytes
ENSPTRG00000010852
I
0.732
RBM42
Pteropus vampyrus
ENSPVAG00000012815
I
0.732
RBM42
Ochotona princeps
ENSOPRG00000001229
I
0.732
RBM42
Otolemur garnettii
ENSOGAG00000004144
I
0.732
Rbm42
Mus musculus
ENSMUSG00000036733
I
0.732
RBM42
Anolis carolinensis
ENSACAG00000005495
I
0.732
RBM42
Monodelphis domestica
ENSMODG00000013957
I
0.732
RBM42
Oryctolagus cuniculus
ENSOCUG00000003337
I
0.732
RBM42
Macaca mulatta
ENSMMUG00000018954
I
0.732
TGGT1_017860
Toxoplasma gondii
TGGT1_017860
N
0.718
TGME49_003080
Toxoplasma gondii
TGME49_003080
N
0.718
TGVEG_046310
Toxoplasma gondii
TGVEG_046310
N
0.718
NCLIV_021850
Neospora caninum
NCLIV_021850
N
0.718
RBM42
Tetraodon nigroviridis
ENSTNIG00000011669
I
0.718
RBM42
Oryzias latipes
ENSORLG00000003387
I
0.718
RBM42
Gasterosteus aculeatus
ENSGACG00000004170
I
0.718
RBM42
Takifugu rubripes
ENSTRUG00000004663
I
0.718
GSPATP00035306001
Paramecium tetraurelia
GSPATP00035306001
N
0.718
76581
Helobdella robusta
76581
I
0.704
rbm42
Danio rerio
ENSDARG00000039910
I
0.704