e_gw1.156.67.1 (Physcomitrella patens)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 e_gw1.156.67.1 T49790_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
RBM42
M142_0.6 		Homo sapiens AACUAMG RNAcompete
Ray et al.(2013)
RNCMPT00151 		0.718
CG2931
M138_0.6 		Drosophila melanogaster DACUAAG RNAcompete
Ray et al.(2013)
RNCMPT00147 		0.718
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
e_gw1.156.67.1 RRM 75 145

Links

Other RRM family RBPs
Other Physcomitrella patens RBPs

85 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MDP0000320908 Malus x domestica MDP0000320908 I 0.930
MDP0000283678 Malus x domestica MDP0000283678 I 0.930
ppa010477m Prunus persica ppa010477m I 0.930
Glyma10g30900.1 Glycine max Glyma10g30900.1 I 0.915
GSVIVG00016104001 Vitis vinifera GSVIVG00016104001 I 0.901
Medtr1g093610 Medicago truncatula Medtr1g093610 I 0.901
PDK_20s1323974g003 Phoenix dactylifera PDK_20s1323974g003 I 0.901
29680.m001693 Ricinus communis 29680.m001693 I 0.901
cassava22669.valid.m1 Manihot esculenta cassava22669.valid.m1 I 0.901
Glyma20g36570.1 Glycine max Glyma20g36570.1 I 0.901
PDK_20s1301681g005 Phoenix dactylifera PDK_20s1301681g005 I 0.887
PK16312.1 Cannabis sativa PK16312.1 I 0.887
Cucsa.178480 Cucumis sativus Cucsa.178480 I 0.887
BGIOSIBCE028936 Oryza indica BGIOSIBCE028936 I 0.873
Sb02g038420 Sorghum bicolor Sb02g038420 I 0.873
B9IPA5_POPTR Populus trichocarpa POPTR_0019s03570 I 0.873
LOC_Os08g45240 Oryza sativa LOC_Os08g45240 I 0.873
mgf021739m Mimulus guttatus mgf021739m I 0.873
GRMZM2G068255 Zea mays GRMZM2G068255 I 0.873
gw1.0.1780.1 Selaginella moellendorfii gw1.0.1780.1 I 0.861
XM_002884402.1 Arabidopsis lyrata fgenesh2_kg.3__407__AT3G04500.1 I 0.859
GSVIVG00023509001 Vitis vinifera GSVIVG00023509001 I 0.859
B9I5N8_POPTR Populus trichocarpa POPTR_0013s04390 I 0.859
BRADI3G49130 Brachypodium distachyon BRADI3G49130 I 0.859
LjSGA_021949.1 Lotus japonicus LjSGA_021949.1 I 0.859
BRADI3G12840 Brachypodium distachyon BRADI3G12840 I 0.859
Glyma11g01300.1 Glycine max Glyma11g01300.1 I 0.859
BGIOSIBCE007866 Oryza indica BGIOSIBCE007866 I 0.845
AT3G04500 Arabidopsis thaliana AT3G04500-TAIR-G I 0.845
LOC_Os02g40900 Oryza sativa LOC_Os02g40900 I 0.831
PDK_20s1329112g001 Phoenix dactylifera PDK_20s1329112g001 N 0.817
GRMZM2G125529 Zea mays GRMZM2G125529 I 0.803
SB04G026430 Sorghum bicolor Sb04g026430 I 0.803
cassava22670.valid.m1 Manihot esculenta cassava22670.valid.m1 N 0.750
chr5.LjT18P14.100.nd Lotus japonicus chr5.LjT18P14.100.nd N 0.736
TGVEG_046310 Toxoplasma gondii TGVEG_046310 N 0.732
NCLIV_021850 Neospora caninum NCLIV_021850 N 0.732
mgf018525m Mimulus guttatus mgf018525m I 0.732
TGGT1_017860 Toxoplasma gondii TGGT1_017860 N 0.732
TGME49_003080 Toxoplasma gondii TGME49_003080 N 0.732
CG2931 Drosophila melanogaster FBgn0037342 D 0.718
RBM42 Spermophilus tridecemlineatus ENSSTOG00000013050 I 0.718
GF11626 Drosophila ananassae FBgn0088666 I 0.718
RBM42 Tarsius syrichta ENSTSYG00000014688 I 0.718
GI23084 Drosophila mojavensis FBgn0145811 I 0.718
GE24162 Drosophila yakuba FBgn0241294 I 0.718
GM10617 Drosophila sechellia FBgn0165563 I 0.718
RBM42 Sus scrofa ENSSSCG00000002905 I 0.718
GG10948 Drosophila erecta FBgn0103251 I 0.718
RBM42 Ochotona princeps ENSOPRG00000001229 I 0.718
RBM42 Microcebus murinus ENSMICG00000009880 I 0.718
ENSMEUG00000016300 Macropus eugenii ENSMEUG00000016300 I 0.718
RBM42 Gorilla gorilla ENSGGOG00000009972 I 0.718
RBM42 Myotis lucifugus ENSMLUG00000011334 I 0.718
RBM42 Macaca mulatta ENSMMUG00000018954 I 0.718
RBM42 Sorex araneus ENSSARG00000010724 I 0.718
RBM42 Monodelphis domestica ENSMODG00000013957 I 0.718
RBM42 Homo sapiens ENSG00000126254 D 0.718
RBM42 Erinaceus europaeus ENSEEUG00000004841 I 0.718
RBM42_BOVIN Bos taurus ENSBTAG00000013440 I 0.718
Ame_R009099 Ailuropoda melanoleuca Ame_R009099 I 0.718
RBM42 Canis familiaris ENSCAFG00000006925 I 0.718
RBM42 Callithrix jacchus ENSCJAG00000010220 I 0.718
LOC100051102 Equus caballus ENSECAG00000018215 I 0.718
RBM42 Cavia porcellus ENSCPOG00000012365 I 0.718
RBM42 Oryctolagus cuniculus ENSOCUG00000003337 I 0.718
Rbm42 Mus musculus ENSMUSG00000036733 I 0.718
RBM42 Procavia capensis ENSPCAG00000013053 I 0.718
RBM42 Pteropus vampyrus ENSPVAG00000012815 I 0.718
RBM42 Pan troglodytes ENSPTRG00000010852 I 0.718
ENSPPYG00000009871 Pongo pygmaeus ENSPPYG00000009871 I 0.718
RBM42 Otolemur garnettii ENSOGAG00000004144 I 0.718
Rbm42 Rattus norvegicus ENSRNOG00000024278 I 0.718
mgf008981m Mimulus guttatus mgf008981m I 0.708
GA15528-RA Drosophila pseudoobscura FBgn0075545 I 0.704
RBM42 Tetraodon nigroviridis ENSTNIG00000011669 I 0.704
RBM42 Takifugu rubripes ENSTRUG00000004663 I 0.704
RBM42 Gasterosteus aculeatus ENSGACG00000004170 I 0.704
GD19605 Drosophila simulans FBgn0191097 I 0.704
GJ22705 Drosophila virilis FBgn0209809 I 0.704
GL22151 Drosophila persimilis FBgn0159743 I 0.704
PHUM106890 Pediculus humanus PHUM106890 I 0.704
GH22277 Drosophila grimshawi FBgn0129737 I 0.704
RBM42 Oryzias latipes ENSORLG00000003387 I 0.704
GK12952 Drosophila willistoni FBgn0214961 I 0.704