PDK_20s1301681g005 (Phoenix dactylifera)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 PDK_20s1301681g005 T58031_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
RBM42
M142_0.6 		Homo sapiens AACUAMG RNAcompete
Ray et al.(2013)
RNCMPT00151 		0.746
ENSXETG00000017599
M237_0.6 		Xenopus tropicalis WACUAC RNAcompete
Ray et al.(2013)
RNCMPT00282 		0.718
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
PDK_20s1301681g005 RRM 57 127

Links

Other RRM family RBPs
Other Phoenix dactylifera RBPs

80 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma20g36570.1 Glycine max Glyma20g36570.1 I 0.958
Glyma10g30900.1 Glycine max Glyma10g30900.1 I 0.958
GSVIVG00016104001 Vitis vinifera GSVIVG00016104001 I 0.958
29680.m001693 Ricinus communis 29680.m001693 I 0.958
cassava22669.valid.m1 Manihot esculenta cassava22669.valid.m1 I 0.958
PDK_20s1323974g003 Phoenix dactylifera PDK_20s1323974g003 I 0.958
B9I5N8_POPTR Populus trichocarpa POPTR_0013s04390 I 0.944
PK16312.1 Cannabis sativa PK16312.1 I 0.944
MDP0000320908 Malus x domestica MDP0000320908 I 0.944
GSVIVG00023509001 Vitis vinifera GSVIVG00023509001 I 0.944
MDP0000283678 Malus x domestica MDP0000283678 I 0.944
ppa010477m Prunus persica ppa010477m I 0.944
GRMZM2G068255 Zea mays GRMZM2G068255 I 0.930
Cucsa.178480 Cucumis sativus Cucsa.178480 I 0.930
B9IPA5_POPTR Populus trichocarpa POPTR_0019s03570 I 0.930
LjSGA_021949.1 Lotus japonicus LjSGA_021949.1 I 0.930
Medtr1g093610 Medicago truncatula Medtr1g093610 I 0.930
Sb02g038420 Sorghum bicolor Sb02g038420 I 0.930
Glyma11g01300.1 Glycine max Glyma11g01300.1 I 0.915
LOC_Os08g45240 Oryza sativa LOC_Os08g45240 I 0.915
mgf021739m Mimulus guttatus mgf021739m I 0.915
BRADI3G12840 Brachypodium distachyon BRADI3G12840 I 0.915
BGIOSIBCE028936 Oryza indica BGIOSIBCE028936 I 0.915
BGIOSIBCE007866 Oryza indica BGIOSIBCE007866 I 0.901
AT3G04500 Arabidopsis thaliana AT3G04500-TAIR-G I 0.887
LOC_Os02g40900 Oryza sativa LOC_Os02g40900 I 0.887
BRADI3G49130 Brachypodium distachyon BRADI3G49130 I 0.887
XM_002884402.1 Arabidopsis lyrata fgenesh2_kg.3__407__AT3G04500.1 I 0.887
e_gw1.156.67.1 Physcomitrella patens e_gw1.156.67.1 I 0.887
GRMZM2G125529 Zea mays GRMZM2G125529 I 0.831
SB04G026430 Sorghum bicolor Sb04g026430 I 0.831
gw1.0.1780.1 Selaginella moellendorfii gw1.0.1780.1 I 0.819
PDK_20s1329112g001 Phoenix dactylifera PDK_20s1329112g001 N 0.817
cassava22670.valid.m1 Manihot esculenta cassava22670.valid.m1 N 0.806
mgf018525m Mimulus guttatus mgf018525m I 0.803
chr5.LjT18P14.100.nd Lotus japonicus chr5.LjT18P14.100.nd N 0.792
mgf008981m Mimulus guttatus mgf008981m I 0.778
Ame_R009099 Ailuropoda melanoleuca Ame_R009099 I 0.746
RBM42 Tarsius syrichta ENSTSYG00000014688 I 0.746
RBM42 Spermophilus tridecemlineatus ENSSTOG00000013050 I 0.746
RBM42 Sus scrofa ENSSSCG00000002905 I 0.746
ENSMEUG00000016300 Macropus eugenii ENSMEUG00000016300 I 0.746
RBM42 Gorilla gorilla ENSGGOG00000009972 I 0.746
RBM42 Microcebus murinus ENSMICG00000009880 I 0.746
RBM42 Myotis lucifugus ENSMLUG00000011334 I 0.746
RBM42 Monodelphis domestica ENSMODG00000013957 I 0.746
RBM42 Homo sapiens ENSG00000126254 D 0.746
RBM42 Erinaceus europaeus ENSEEUG00000004841 I 0.746
RBM42 Canis familiaris ENSCAFG00000006925 I 0.746
RBM42_BOVIN Bos taurus ENSBTAG00000013440 I 0.746
RBM42 Callithrix jacchus ENSCJAG00000010220 I 0.746
RBM42 Cavia porcellus ENSCPOG00000012365 I 0.746
LOC100051102 Equus caballus ENSECAG00000018215 I 0.746
Rbm42 Mus musculus ENSMUSG00000036733 I 0.746
RBM42 Macaca mulatta ENSMMUG00000018954 I 0.746
RBM42 Otolemur garnettii ENSOGAG00000004144 I 0.746
RBM42 Ochotona princeps ENSOPRG00000001229 I 0.746
RBM42 Pan troglodytes ENSPTRG00000010852 I 0.746
ENSPPYG00000009871 Pongo pygmaeus ENSPPYG00000009871 I 0.746
RBM42 Pteropus vampyrus ENSPVAG00000012815 I 0.746
RBM42 Oryctolagus cuniculus ENSOCUG00000003337 I 0.746
RBM42 Sorex araneus ENSSARG00000010724 I 0.746
Rbm42 Rattus norvegicus ENSRNOG00000024278 I 0.746
RBM42 Procavia capensis ENSPCAG00000013053 I 0.746
RBM42 Takifugu rubripes ENSTRUG00000004663 I 0.732
RBM42 Gasterosteus aculeatus ENSGACG00000004170 I 0.732
RBM42 Tetraodon nigroviridis ENSTNIG00000011669 I 0.732
RBM42 Oryzias latipes ENSORLG00000003387 I 0.732
TGME49_003080 Toxoplasma gondii TGME49_003080 N 0.718
RBM42 Anolis carolinensis ENSACAG00000005495 I 0.718
A2VDB3 Xenopus laevis A2VDB3 I 0.718
AAI29698 Xenopus laevis AAI29698 I 0.718
TGVEG_046310 Toxoplasma gondii TGVEG_046310 N 0.718
NCLIV_021850 Neospora caninum NCLIV_021850 N 0.718
TGGT1_017860 Toxoplasma gondii TGGT1_017860 N 0.718
ENSXETG00000017599 Xenopus tropicalis ENSXETG00000017599 D 0.718
rbm42 Danio rerio ENSDARG00000039910 I 0.718
estExt_fgenesh2_pg.C_7640002 Branchiostoma floridae estExt_fgenesh2_pg.C_7640002 I 0.704
estExt_fgenesh2_pg.C_360096 Branchiostoma floridae estExt_fgenesh2_pg.C_360096 I 0.704
SPPG_03010 Spizellomyces punctatus SPPG_03010 I 0.704