CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GSTUMT00009927001
(
Tuber melanosporum
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
GSTUMT00009927001
T56958_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
GSTUMT00009927001
RRM
21
92
LYVQNLNDKVRKQDLRTELYTLFSTYGVVLDVNALKTMKGRGQAHIAFRDVAAATQAMRALQGFEFFGKEMR
Links
Other
RRM
family RBPs
Other
Tuber melanosporum
RBPs
23 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AFUA_6G06490
Aspergillus fumigatus
CADAFUAG00001761
N
0.764
NFIA_052140
Neosartorya fischeri
CADNFIAG00004882
N
0.764
ACLA_088270
Aspergillus clavatus
CADACLAG00008860
N
0.750
UREG_07837
Uncinocarpus reesii
UREG_07837
N
0.750
ATEG_07424
Aspergillus terreus
CADATEAG00001937
N
0.750
An18g06600
Aspergillus niger
CADANGAG00014300
N
0.736
CPSG_08791
Coccidioides posadasii
CPSG_08791
N
0.736
BDBG_01733
Blastomyces dermatitidis
BDBG_01733
N
0.736
PABG_01366
Paracoccidioides brasiliensis
PABG_01366
N
0.736
CIMG_07275
Coccidioides immitis
CIMG_07275
N
0.722
SNOG_03502
Stagonospora nodorum
SNOG_03502
N
0.722
HCAG_04114
Histoplasma capsulatum
HCAG_04114
N
0.722
fgenesh1_pg.00129_#_17
Aspergillus carbonarius
fgenesh1_pg.00129_#_17
N
0.722
EAT88707.1
Phaeosphaeria nodorum
EAT88707.1
N
0.722
Pc14g01320
Penicillium chrysogenum
Pc14g01320
N
0.712
ANIA_05779
Aspergillus nidulans
CADANIAG00003274
N
0.708
TEQG_07968
Trichophyton equinum
TEQG_07968
N
0.708
ARB_00996
Arthroderma benhamiae
ARB_00996
N
0.708
PMAA_046550
Penicillium marneffei
PMAA_046550
N
0.708
MCYG_07255
Microsporum canis
MCYG_07255
N
0.708
MGYG_04754
Microsporum gypseum
MGYG_04754
N
0.708
TERG_01651
Trichophyton rubrum
TERG_01651
N
0.708
TESG_04202
Trichophyton tonsurans
TESG_04202
N
0.708