GSVIVG00025009001 (Vitis vinifera)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 GSVIVG00025009001 T44724_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
GSVIVT00025009001 RRM 89 158

Links

Other RRM family RBPs
Other Vitis vinifera RBPs

82 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava37747.valid.m1 Manihot esculenta cassava37747.valid.m1 N 0.971
cassava37746.valid.m1 Manihot esculenta cassava37746.valid.m1 N 0.971
29876.m000260 Ricinus communis 29876.m000260 N 0.957
XM_002873013.1 Arabidopsis lyrata fgenesh2_kg.6__165__AT5G02530.1 N 0.957
ppa010358m Prunus persica ppa010358m N 0.957
AT5G02530 Arabidopsis thaliana AT5G02530-TAIR-G N 0.957
mgf010207m Mimulus guttatus mgf010207m N 0.943
cassava35480.valid.m1 Manihot esculenta cassava35480.valid.m1 N 0.943
Medtr4g078540 Medicago truncatula Medtr4g078540 N 0.929
MDP0000251188 Malus x domestica MDP0000251188 N 0.929
MDP0000153894 Malus x domestica MDP0000153894 N 0.929
MDP0000119945 Malus x domestica MDP0000119945 N 0.929
SB01G039330 Sorghum bicolor Sb01g039330 N 0.914
LOC_Os12g01010 Oryza sativa LOC_Os12g01010 N 0.914
Cucsa.172290 Cucumis sativus Cucsa.172290 N 0.914
BGIOSIBCE010579 Oryza indica BGIOSIBCE010579 N 0.900
Glyma11g15040.1 Glycine max Glyma11g15040.1 N 0.900
Glyma13g40930.1 Glycine max Glyma13g40930.1 N 0.900
Glyma12g07010.1 Glycine max Glyma12g07010.1 N 0.900
B9GER3_POPTR Populus trichocarpa POPTR_0001s24350 N 0.900
LOC_Os03g17010 Oryza sativa LOC_Os03g17010 N 0.900
LOC_Os11g01020 Oryza sativa LOC_Os11g01020 N 0.886
BRADI4G45380 Brachypodium distachyon BRADI4G45380 N 0.886
BGIOSIBCE007269 Oryza indica BGIOSIBCE007269 N 0.886
BGIOSIBCE007271 Oryza indica BGIOSIBCE007271 N 0.886
GRMZM2G166780 Zea mays GRMZM2G166780 N 0.886
GRMZM2G157329 Zea mays GRMZM2G157329 N 0.886
e_gw1.77.52.1 Physcomitrella patens e_gw1.77.52.1 N 0.871
e_gw1.4.224.1 Physcomitrella patens e_gw1.4.224.1 N 0.871
B9NB27_POPTR Populus trichocarpa POPTR_0016s11470 N 0.871
Cucsa.213420 Cucumis sativus Cucsa.213420 N 0.871
estExt_fgenesh1_pg.C_3900014 Physcomitrella patens estExt_fgenesh1_pg.C_3900014 N 0.857
XM_002864614.1 Arabidopsis lyrata fgenesh2_kg.8__1946__AT5G59950.1 N 0.857
AT5G59950 Arabidopsis thaliana AT5G59950-TAIR-G N 0.857
fgenesh1_pm.scaffold_57000010 Physcomitrella patens fgenesh1_pm.scaffold_57000010 N 0.843
cassava6599.valid.m1 Manihot esculenta cassava6599.valid.m1 N 0.843
B9HTL2_POPTR Populus trichocarpa POPTR_0010s21510 N 0.843
BRADI1G66430 Brachypodium distachyon BRADI1G66430 N 0.829
GSVIVG00016588001 Vitis vinifera GSVIVG00016588001 N 0.814
MDP0000320467 Malus x domestica MDP0000320467 N 0.814
GRMZM2G171921 Zea mays GRMZM2G171921 N 0.800
SB07G020860 Sorghum bicolor Sb07g020860 N 0.800
LOC_Os08g33120 Oryza sativa LOC_Os08g33120 N 0.786
BGIOSIBCE027930 Oryza indica BGIOSIBCE027930 N 0.786
LjT41B11.50.nd Lotus japonicus LjT41B11.50.nd N 0.771
BRADI3G36320 Brachypodium distachyon BRADI3G36320 N 0.771
cassava6245.valid.m1 Manihot esculenta cassava6245.valid.m1 N 0.757
cassava6246.valid.m1 Manihot esculenta cassava6246.valid.m1 N 0.757
cassava9473.m1 Manihot esculenta cassava9473.m1 N 0.757
cassava9472.m1 Manihot esculenta cassava9472.m1 N 0.757
GSVIVG00030785001 Vitis vinifera GSVIVG00030785001 N 0.757
mgf013964m Mimulus guttatus mgf013964m N 0.757
PK16300.1 Cannabis sativa PK16300.1 N 0.743
PDK_20s130094197g001 Phoenix dactylifera PDK_20s130094197g001 N 0.743
PDK_20s1328531g001 Phoenix dactylifera PDK_20s1328531g001 N 0.743
PDK_20s1300711g001 Phoenix dactylifera PDK_20s1300711g001 N 0.743
Cucsa.137040 Cucumis sativus Cucsa.137040 N 0.743
cassava30012.valid.m1 Manihot esculenta cassava30012.valid.m1 N 0.743
mgf000319m Mimulus guttatus mgf000319m N 0.743
e_gw1.0.323.1 Selaginella moellendorfii e_gw1.0.323.1 N 0.743
cassava30010.valid.m1 Manihot esculenta cassava30010.valid.m1 N 0.743
cassava30011.valid.m1 Manihot esculenta cassava30011.valid.m1 N 0.743
B9GUT0_POPTR Populus trichocarpa POPTR_0017s02890 N 0.743
29005.m000257 Ricinus communis 29005.m000257 N 0.729
fgeneshTA2_pg.C_scaffold_2000899 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_2000899 N 0.729
gw1.1.189.1 Selaginella moellendorfii gw1.1.189.1 N 0.729
ppa009623m Prunus persica ppa009623m N 0.729
MDP0000202749 Malus x domestica MDP0000202749 N 0.729
MDP0000275263 Malus x domestica MDP0000275263 N 0.729
MDP0000299639 Malus x domestica MDP0000299639 N 0.729
Medtr3g087650 Medicago truncatula Medtr3g087650 N 0.714
GRMZM2G019251 Zea mays GRMZM2G019251 N 0.714
29585.m000588 Ricinus communis 29585.m000588 N 0.714
SB02G007020 Sorghum bicolor Sb02g007020 N 0.714
Medtr3g087640 Medicago truncatula Medtr3g087640 N 0.714
LjSGA_065336.1 Lotus japonicus LjSGA_065336.1 N 0.714
PK26404.1 Cannabis sativa PK26404.1 N 0.714
Glyma18g04530.1 Glycine max Glyma18g04530.1 N 0.700
Glyma02g10380.1 Glycine max Glyma02g10380.1 N 0.700
Glyma11g33670.1 Glycine max Glyma11g33670.1 N 0.700
GRMZM2G140352 Zea mays GRMZM2G140352 N 0.700
ppa014850m Prunus persica ppa014850m N 0.700