cassava37746.valid.m1 (Manihot esculenta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 cassava37746.valid.m1 T49360_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava37746.valid.m1 RRM 87 156

Links

Other RRM family RBPs
Other Manihot esculenta RBPs

82 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava37747.valid.m1 Manihot esculenta cassava37747.valid.m1 N 1.000
29876.m000260 Ricinus communis 29876.m000260 N 0.986
GSVIVG00025009001 Vitis vinifera GSVIVG00025009001 N 0.971
mgf010207m Mimulus guttatus mgf010207m N 0.957
AT5G02530 Arabidopsis thaliana AT5G02530-TAIR-G N 0.957
XM_002873013.1 Arabidopsis lyrata fgenesh2_kg.6__165__AT5G02530.1 N 0.957
MDP0000119945 Malus x domestica MDP0000119945 N 0.943
MDP0000153894 Malus x domestica MDP0000153894 N 0.943
ppa010358m Prunus persica ppa010358m N 0.943
MDP0000251188 Malus x domestica MDP0000251188 N 0.943
cassava35480.valid.m1 Manihot esculenta cassava35480.valid.m1 N 0.943
LOC_Os12g01010 Oryza sativa LOC_Os12g01010 N 0.929
Medtr4g078540 Medicago truncatula Medtr4g078540 N 0.914
SB01G039330 Sorghum bicolor Sb01g039330 N 0.900
BGIOSIBCE007269 Oryza indica BGIOSIBCE007269 N 0.900
BGIOSIBCE007271 Oryza indica BGIOSIBCE007271 N 0.900
BRADI4G45380 Brachypodium distachyon BRADI4G45380 N 0.900
LOC_Os11g01020 Oryza sativa LOC_Os11g01020 N 0.900
Cucsa.172290 Cucumis sativus Cucsa.172290 N 0.900
e_gw1.77.52.1 Physcomitrella patens e_gw1.77.52.1 N 0.886
B9GER3_POPTR Populus trichocarpa POPTR_0001s24350 N 0.886
Glyma11g15040.1 Glycine max Glyma11g15040.1 N 0.886
Glyma13g40930.1 Glycine max Glyma13g40930.1 N 0.886
Cucsa.213420 Cucumis sativus Cucsa.213420 N 0.886
Glyma12g07010.1 Glycine max Glyma12g07010.1 N 0.886
B9HTL2_POPTR Populus trichocarpa POPTR_0010s21510 N 0.871
GRMZM2G157329 Zea mays GRMZM2G157329 N 0.871
GRMZM2G166780 Zea mays GRMZM2G166780 N 0.871
estExt_fgenesh1_pg.C_3900014 Physcomitrella patens estExt_fgenesh1_pg.C_3900014 N 0.871
LOC_Os03g17010 Oryza sativa LOC_Os03g17010 N 0.871
BGIOSIBCE010579 Oryza indica BGIOSIBCE010579 N 0.871
XM_002864614.1 Arabidopsis lyrata fgenesh2_kg.8__1946__AT5G59950.1 N 0.857
B9NB27_POPTR Populus trichocarpa POPTR_0016s11470 N 0.857
e_gw1.4.224.1 Physcomitrella patens e_gw1.4.224.1 N 0.857
AT5G59950 Arabidopsis thaliana AT5G59950-TAIR-G N 0.857
cassava6599.valid.m1 Manihot esculenta cassava6599.valid.m1 N 0.857
GSVIVG00016588001 Vitis vinifera GSVIVG00016588001 N 0.843
fgenesh1_pm.scaffold_57000010 Physcomitrella patens fgenesh1_pm.scaffold_57000010 N 0.829
MDP0000320467 Malus x domestica MDP0000320467 N 0.829
BRADI1G66430 Brachypodium distachyon BRADI1G66430 N 0.800
SB07G020860 Sorghum bicolor Sb07g020860 N 0.800
GRMZM2G171921 Zea mays GRMZM2G171921 N 0.800
LjT41B11.50.nd Lotus japonicus LjT41B11.50.nd N 0.786
BGIOSIBCE027930 Oryza indica BGIOSIBCE027930 N 0.786
LOC_Os08g33120 Oryza sativa LOC_Os08g33120 N 0.786
e_gw1.0.323.1 Selaginella moellendorfii e_gw1.0.323.1 N 0.757
cassava6246.valid.m1 Manihot esculenta cassava6246.valid.m1 N 0.757
BRADI3G36320 Brachypodium distachyon BRADI3G36320 N 0.757
mgf013964m Mimulus guttatus mgf013964m N 0.757
cassava6245.valid.m1 Manihot esculenta cassava6245.valid.m1 N 0.757
GSVIVG00030785001 Vitis vinifera GSVIVG00030785001 N 0.757
PDK_20s130094197g001 Phoenix dactylifera PDK_20s130094197g001 N 0.757
cassava9472.m1 Manihot esculenta cassava9472.m1 N 0.757
cassava9473.m1 Manihot esculenta cassava9473.m1 N 0.757
gw1.1.189.1 Selaginella moellendorfii gw1.1.189.1 N 0.743
cassava30010.valid.m1 Manihot esculenta cassava30010.valid.m1 N 0.743
mgf000319m Mimulus guttatus mgf000319m N 0.743
cassava30012.valid.m1 Manihot esculenta cassava30012.valid.m1 N 0.743
PK16300.1 Cannabis sativa PK16300.1 N 0.743
Cucsa.137040 Cucumis sativus Cucsa.137040 N 0.743
B9GUT0_POPTR Populus trichocarpa POPTR_0017s02890 N 0.743
cassava30011.valid.m1 Manihot esculenta cassava30011.valid.m1 N 0.743
PDK_20s1328531g001 Phoenix dactylifera PDK_20s1328531g001 N 0.743
29005.m000257 Ricinus communis 29005.m000257 N 0.729
29585.m000588 Ricinus communis 29585.m000588 N 0.729
SB02G007020 Sorghum bicolor Sb02g007020 N 0.729
MDP0000275263 Malus x domestica MDP0000275263 N 0.729
GRMZM2G019251 Zea mays GRMZM2G019251 N 0.729
MDP0000202749 Malus x domestica MDP0000202749 N 0.729
MDP0000299639 Malus x domestica MDP0000299639 N 0.729
ppa009623m Prunus persica ppa009623m N 0.729
PDK_20s1300711g001 Phoenix dactylifera PDK_20s1300711g001 N 0.729
Glyma02g10380.1 Glycine max Glyma02g10380.1 N 0.714
fgeneshTA2_pg.C_scaffold_2000899 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_2000899 N 0.714
GRMZM2G140352 Zea mays GRMZM2G140352 N 0.714
Medtr3g087650 Medicago truncatula Medtr3g087650 N 0.714
Medtr3g087640 Medicago truncatula Medtr3g087640 N 0.714
ppa014850m Prunus persica ppa014850m N 0.714
LjSGA_065336.1 Lotus japonicus LjSGA_065336.1 N 0.700
Medtr7g025460 Medicago truncatula Medtr7g025460 N 0.700
Glyma18g04530.1 Glycine max Glyma18g04530.1 N 0.700
Glyma11g33670.1 Glycine max Glyma11g33670.1 N 0.700