CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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MDP0000293302
(
Malus x domestica
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
MDP0000293302
T57589_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
MDP0000293302
RRM
74
119
LFIRGLGWDTTTEGLRSLFSAYGELEEAIVILDKTTGKSKGYGFVT
MDP0000293302
RRM
141
210
IYVANVPYDMPSDKLLAHFALYGEIEEGPLGFDKXTGKCKGYALFVYKTPEGAQAALVDPAKNIEGRQLL
Links
Other
RRM
family RBPs
Other
Malus x domestica
RBPs
8 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
MDP0000596919
Malus x domestica
MDP0000596919
N
0.821
MDP0000250519
Malus x domestica
MDP0000250519
N
0.800
PK28408.1
Cannabis sativa
PK28408.1
N
0.764
ppa005857m
Prunus persica
ppa005857m
N
0.764
MDP0000410930
Malus x domestica
MDP0000410930
N
0.757
MDP0000575061
Malus x domestica
MDP0000575061
N
0.757
Cucsa.273510
Cucumis sativus
Cucsa.273510
N
0.707
chr3.CM0282.340.nc
Lotus japonicus
chr3.CM0282.340.nc
N
0.707