CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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MDP0000250519
(
Malus x domestica
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
MDP0000250519
T57498_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
MDP0000250519
RRM
74
143
LFIRGLGWDTTTEGLRSLFSAYGEIEEAIVILDKTTGKSKGYGFVTFRHVDGALMALKEPSKKIDGRMTV
MDP0000250519
RRM
169
238
IYVANVPYDMPSDKLLAHFALYGEIEEGPLGFDKQTGKCKGYALFVYKTPEGAQAALVDPVKNIEGRQLT
Links
Other
RRM
family RBPs
Other
Malus x domestica
RBPs
29 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
MDP0000596919
Malus x domestica
MDP0000596919
N
0.971
MDP0000410930
Malus x domestica
MDP0000410930
N
0.950
MDP0000575061
Malus x domestica
MDP0000575061
N
0.950
ppa005857m
Prunus persica
ppa005857m
N
0.943
PK28408.1
Cannabis sativa
PK28408.1
N
0.929
Cucsa.273510
Cucumis sativus
Cucsa.273510
N
0.850
B9GGV7_POPTR
Populus trichocarpa
POPTR_0001s38640
N
0.843
chr3.CM0282.340.nc
Lotus japonicus
chr3.CM0282.340.nc
N
0.843
Glyma06g33940.1
Glycine max
Glyma06g33940.1
N
0.836
Glyma12g19050.1
Glycine max
Glyma12g19050.1
N
0.829
MDP0000293302
Malus x domestica
MDP0000293302
N
0.800
AT3G15010
Arabidopsis thaliana
AT3G15010-TAIR-G
N
0.800
MDP0000245564
Malus x domestica
MDP0000245564
N
0.793
XM_002882862.1
Arabidopsis lyrata
fgenesh2_kg.3__1628__AT3G15010.2
N
0.786
MDP0000601282
Malus x domestica
MDP0000601282
N
0.786
SB03G027820
Sorghum bicolor
Sb03g027820
N
0.779
GRMZM2G049866
Zea mays
GRMZM2G049866
N
0.764
GRMZM2G117715
Zea mays
GRMZM2G117715
N
0.764
mgf018937m
Mimulus guttatus
mgf018937m
N
0.761
XM_002894385.1
Arabidopsis lyrata
scaffold_105150.1
N
0.757
LOC_Os01g42820
Oryza sativa
LOC_Os01g42820
N
0.757
BRADI2G43460
Brachypodium distachyon
BRADI2G43460
N
0.750
PK03611.1
Cannabis sativa
PK03611.1
N
0.736
MDP0000709988
Malus x domestica
MDP0000709988
N
0.714
cassava28994.valid.m1
Manihot esculenta
cassava28994.valid.m1
N
0.714
cassava28995.valid.m1
Manihot esculenta
cassava28995.valid.m1
N
0.714
29900.m001607
Ricinus communis
29900.m001607
N
0.714
cassava28996.valid.m1
Manihot esculenta
cassava28996.valid.m1
N
0.714
cassava18809.valid.m1
Manihot esculenta
cassava18809.valid.m1
N
0.707