ppa005857m (Prunus persica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ppa005857m T58364_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ppa005857m RRM 74 143
ppa005857m RRM 169 238

Links

Other RRM family RBPs
Other Prunus persica RBPs

31 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MDP0000250519 Malus x domestica MDP0000250519 N 0.943
MDP0000596919 Malus x domestica MDP0000596919 N 0.929
PK28408.1 Cannabis sativa PK28408.1 N 0.900
MDP0000410930 Malus x domestica MDP0000410930 N 0.893
MDP0000575061 Malus x domestica MDP0000575061 N 0.893
chr3.CM0282.340.nc Lotus japonicus chr3.CM0282.340.nc N 0.864
Cucsa.273510 Cucumis sativus Cucsa.273510 N 0.857
Glyma06g33940.1 Glycine max Glyma06g33940.1 N 0.850
Glyma12g19050.1 Glycine max Glyma12g19050.1 N 0.843
B9GGV7_POPTR Populus trichocarpa POPTR_0001s38640 N 0.836
AT3G15010 Arabidopsis thaliana AT3G15010-TAIR-G N 0.814
XM_002882862.1 Arabidopsis lyrata fgenesh2_kg.3__1628__AT3G15010.2 N 0.800
mgf018937m Mimulus guttatus mgf018937m N 0.775
XM_002894385.1 Arabidopsis lyrata scaffold_105150.1 N 0.771
SB03G027820 Sorghum bicolor Sb03g027820 N 0.771
GRMZM2G049866 Zea mays GRMZM2G049866 N 0.764
MDP0000293302 Malus x domestica MDP0000293302 N 0.764
GRMZM2G117715 Zea mays GRMZM2G117715 N 0.764
LOC_Os01g42820 Oryza sativa LOC_Os01g42820 N 0.757
BRADI2G43460 Brachypodium distachyon BRADI2G43460 N 0.743
MDP0000601282 Malus x domestica MDP0000601282 N 0.743
MDP0000245564 Malus x domestica MDP0000245564 N 0.736
PK03611.1 Cannabis sativa PK03611.1 N 0.729
MDP0000709988 Malus x domestica MDP0000709988 N 0.714
29900.m001607 Ricinus communis 29900.m001607 N 0.707
cassava18809.valid.m1 Manihot esculenta cassava18809.valid.m1 N 0.707
mgf011517m Mimulus guttatus mgf011517m N 0.704
mgf005844m Mimulus guttatus mgf005844m N 0.704
cassava28995.valid.m1 Manihot esculenta cassava28995.valid.m1 N 0.700
cassava28994.valid.m1 Manihot esculenta cassava28994.valid.m1 N 0.700
cassava28996.valid.m1 Manihot esculenta cassava28996.valid.m1 N 0.700