Cucsa.273510 (Cucumis sativus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Cucsa.273510 T49617_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.273510.1 RRM 72 141
Cucsa.273510.1 RRM 164 233

Links

Other RRM family RBPs
Other Cucumis sativus RBPs

26 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PK28408.1 Cannabis sativa PK28408.1 N 0.857
ppa005857m Prunus persica ppa005857m N 0.857
MDP0000250519 Malus x domestica MDP0000250519 N 0.850
MDP0000596919 Malus x domestica MDP0000596919 N 0.850
Glyma12g19050.1 Glycine max Glyma12g19050.1 N 0.843
Glyma06g33940.1 Glycine max Glyma06g33940.1 N 0.843
chr3.CM0282.340.nc Lotus japonicus chr3.CM0282.340.nc N 0.836
MDP0000575061 Malus x domestica MDP0000575061 N 0.829
MDP0000410930 Malus x domestica MDP0000410930 N 0.829
AT3G15010 Arabidopsis thaliana AT3G15010-TAIR-G N 0.807
B9GGV7_POPTR Populus trichocarpa POPTR_0001s38640 N 0.793
XM_002882862.1 Arabidopsis lyrata fgenesh2_kg.3__1628__AT3G15010.2 N 0.786
XM_002894385.1 Arabidopsis lyrata scaffold_105150.1 N 0.771
SB03G027820 Sorghum bicolor Sb03g027820 N 0.729
mgf018937m Mimulus guttatus mgf018937m N 0.725
GRMZM2G049866 Zea mays GRMZM2G049866 N 0.721
LOC_Os01g42820 Oryza sativa LOC_Os01g42820 N 0.721
BRADI2G43460 Brachypodium distachyon BRADI2G43460 N 0.721
GRMZM2G117715 Zea mays GRMZM2G117715 N 0.721
cassava18809.valid.m1 Manihot esculenta cassava18809.valid.m1 N 0.714
PK03611.1 Cannabis sativa PK03611.1 N 0.714
MDP0000709988 Malus x domestica MDP0000709988 N 0.707
MDP0000293302 Malus x domestica MDP0000293302 N 0.707
cassava28996.valid.m1 Manihot esculenta cassava28996.valid.m1 N 0.700
cassava28994.valid.m1 Manihot esculenta cassava28994.valid.m1 N 0.700
cassava28995.valid.m1 Manihot esculenta cassava28995.valid.m1 N 0.700