CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
Minc05218
(
Meloidogyne incognita
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
Minc05218
T57791_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Minc05218a
RRM
4
74
LYVGDLHPDVTEAMLFEKFSTSGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERALDTMNFDLLLNKPIR
Minc05218a
RRM
92
161
IFIKNLDKHIDTKAIYDTFSMFGNILSCKVACDLEGNSKGYGFIHFETEDAANKAIEKVNGMLLDGKKVF
Minc05218a
RRM
185
253
VYVKNFGDAINSDKLHEIFSAFGEIISAKSMEDNDGKPKGFGFVAFKDHESAARSVEEMNEKEVPGRAD
Minc05218a
RRM
291
360
LYVKNLDDTVLDDALRKHFEQHGAIASAKVMCDENGRSKGFGFVCFEKPDDATKAVVEMNNKIIGNKPLY
Minc05218b
RRM
4
74
LYVGDLHPDVTEAMLFEKFSTSGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERALDTMNFDLLLNKPIR
Minc05218b
RRM
92
177
IFIKNLDKHIDTKAIYDTFSMFGNILSCKVACDLEGNSKGYGFIHFETEDAANKAIEKVNGMLLDGKKVFVGKFIPRSQREKQIGD
Minc05218b
RRM
185
225
VYVKNFGDAINSDKLHEIFSAFGEIISAKSMEDNDGKPKAT
Links
Other
RRM
family RBPs
Other
Meloidogyne incognita
RBPs
6 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Bm1_16080
Brugia malayi
Bm1_16080
I
0.758
LOAG_01058
Loa loa
LOAG_01058
I
0.758
Bm1_06880
Brugia malayi
Bm1_06880
I
0.754
ISCW014211
Ixodes scapularis
ISCW014211
I
0.722
estExt_Genewise1.C_1790010
Capitella teleta
estExt_Genewise1.C_1790010
I
0.702
CRE22405
Caenorhabditis remanei
CRE22405
N
0.701