estExt_Genewise1.C_1790010 (Capitella teleta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 estExt_Genewise1.C_1790010 T51210_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.757
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.757
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.757
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.736
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.715
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_Genewise1.C_1790010 RRM 14 84
estExt_Genewise1.C_1790010 RRM 102 170
estExt_Genewise1.C_1790010 RRM 194 263
estExt_Genewise1.C_1790010 RRM 297 365

Links

Other RRM family RBPs
Other Capitella teleta RBPs

142 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
amel4_ncbi_hmm1700 Apis mellifera amel4_ncbi_hmm1700 I 0.790
amel4_ncbi_hmm2036 Apis mellifera amel4_ncbi_hmm2036 I 0.790
amel4_ncbi_hmm1364 Apis mellifera amel4_ncbi_hmm1364 I 0.790
BGIBMGA003469 Bombyx mori BGIBMGA003469 I 0.779
nasonia_NCBI_hmm394743 Nasonia vitripennis nasonia_NCBI_hmm394743 I 0.769
nasonia_NCBI_hmm386743 Nasonia vitripennis nasonia_NCBI_hmm386743 I 0.769
nasonia_NCBI_hmm390743 Nasonia vitripennis nasonia_NCBI_hmm390743 I 0.769
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.767
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.767
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.767
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.767
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.767
AAEL010318 Aedes aegypti AAEL010318 I 0.765
PHUM617090 Pediculus humanus PHUM617090 I 0.765
CpipJ_CPIJ007980 Culex pipiens CpipJ_CPIJ007980 I 0.765
CPIJ007980 Culex quinquefasciatus CPIJ007980 I 0.765
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.763
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.763
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.763
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.763
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.763
PABPC1 Homo sapiens ENSG00000070756 D 0.763
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.763
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.763
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.763
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.763
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.763
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.763
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.763
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.760
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.760
ISCW014211 Ixodes scapularis ISCW014211 I 0.759
DGIL_AUG5s5076g2t1 Acyrtosiphon pisum DGIL_AUG5s5076g2t1 I 0.758
185682 Helobdella robusta 185682 I 0.757
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.756
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.756
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.753
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.753
AGAP011092 Anopheles gambiae AGAP011092 I 0.751
pabpc1b Danio rerio ENSDARG00000021140 I 0.750
pabpc1a Danio rerio ENSDARG00000017219 I 0.749
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.749
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.749
gw.1.65.1 Branchiostoma floridae gw.1.65.1 I 0.747
e_gw.313.40.1 Branchiostoma floridae e_gw.313.40.1 I 0.747
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.746
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.746
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.746
e_gw1.115.135.1 Lottia gigantea e_gw1.115.135.1 I 0.743
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.742
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.742
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.742
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.742
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.742
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.742
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.742
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.742
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.742
AAI08463 Xenopus laevis AAI08463 I 0.742
PABPC4 Homo sapiens ENSG00000090621 D 0.742
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.742
CAA40721 Xenopus laevis CAA40721 I 0.742
P20965 Xenopus laevis P20965 I 0.742
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.742
Q6IP09 Xenopus laevis Q6IP09 I 0.742
AAH72110 Xenopus laevis AAH72110 I 0.742
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.742
LOC100054235 Equus caballus ENSECAG00000009396 I 0.742
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.742
AAH52100 Xenopus laevis AAH52100 I 0.742
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.742
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.742
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.739
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.739
Gm10110 Mus musculus ENSMUSG00000062093 I 0.739
AAA60936 Xenopus laevis AAA60936 I 0.739
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.739
Pabpc2 Rattus norvegicus ENSRNOG00000014527 I 0.739
XP_001177907.1 Strongylocentrotus purpuratus XP_001177907.1 I 0.738
XP_801795.2 Strongylocentrotus purpuratus XP_801795.2 I 0.738
GJ21671 Drosophila virilis FBgn0208790 I 0.738
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.735
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.735
PABPC4 Gallus gallus ENSGALG00000003800 I 0.735
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.735
GK19652 Drosophila willistoni FBgn0221650 I 0.734
GI18654 Drosophila mojavensis FBgn0141393 I 0.734
BDE_estExt_fgenesh1_pg.C_380037 Daphnia pulex BDE_estExt_fgenesh1_pg.C_380037 I 0.734
AAH73435 Xenopus laevis AAH73435 I 0.731
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.731
GH21052 Drosophila grimshawi FBgn0128514 I 0.730
PABPC3 Macaca mulatta ENSMMUG00000020835 I 0.728
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.728
pabpc4 Danio rerio ENSDARG00000059259 I 0.728
Q2VIP2_PANTR Pan troglodytes ENSPTRG00000022593 I 0.728
GL11548 Drosophila persimilis FBgn0149157 I 0.727
GA18673-RA Drosophila pseudoobscura FBgn0078673 I 0.727
DGIL_AUG5s1591g1t1 Acyrtosiphon pisum DGIL_AUG5s1591g1t1 I 0.726
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.725
estExt_Genewise1.C_sca_1150143 Lottia gigantea estExt_Genewise1.C_sca_1150143 I 0.725
69344 Helobdella robusta 69344 I 0.725
Pabpc6 Mus musculus ENSMUSG00000046173 I 0.724
Q98SP8 Xenopus laevis Q98SP8 I 0.724
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.724
PABPC1L Takifugu rubripes ENSTRUG00000011085 I 0.724
AAK29408 Xenopus laevis AAK29408 I 0.724
PABPC1L Meleagris gallopavo ENSMGAG00000003674 I 0.724
AAH80020 Xenopus laevis AAH80020 I 0.724
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.724
PABPC1L Monodelphis domestica ENSMODG00000016198 I 0.724
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.721
Pabpc3 Rattus norvegicus ENSRNOG00000017367 I 0.721
PABPC1L Anolis carolinensis ENSACAG00000011841 I 0.721
PABPC1L Macropus eugenii ENSMEUG00000007905 I 0.721
PABPC1L Gallus gallus ENSGALG00000004123 I 0.721
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.720
DGIL_AUG5s9152g1t1 Acyrtosiphon pisum DGIL_AUG5s9152g1t1 I 0.719
PABPC1L Gasterosteus aculeatus ENSGACG00000002792 I 0.717
PABPC3 Homo sapiens ENSG00000151846 D 0.717
AAH71118 Xenopus laevis AAH71118 I 0.717
Q6GR16 Xenopus laevis Q6GR16 I 0.717
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.717
GG21846 Drosophila erecta FBgn0114024 I 0.716
PABPC1L Taeniopygia guttata ENSTGUG00000005114 I 0.716
fgenesh1_pm.scaffold_278000002 Nematostella vectensis fgenesh1_pm.scaffold_278000002 I 0.716
GE11925 Drosophila yakuba FBgn0229707 I 0.716
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.714
XP_002156904.1 Hydra magnipapillata XP_002156904.1 I 0.713
GF12652 Drosophila ananassae FBgn0089688 I 0.713
XP_002156940.1 Hydra magnipapillata XP_002156940.1 I 0.713
pabpc1l Xenopus tropicalis ENSXETG00000022831 I 0.710
pAbp Drosophila melanogaster FBgn0261619 D 0.709
GD11341 Drosophila simulans FBgn0183090 I 0.709
GM21847 Drosophila sechellia FBgn0176724 I 0.709
ENSCING00000002796 Ciona intestinalis ENSCING00000002796 I 0.708
ENSCSAVG00000004246 Ciona savignyi ENSCSAVG00000004246 I 0.708
PABPC1L Bos taurus ENSBTAG00000016849 I 0.707
PABPC1L Sus scrofa ENSSSCG00000007382 I 0.707
Ame_R005305 Ailuropoda melanoleuca Ame_R005305 I 0.703
PABPC1L Canis familiaris ENSCAFG00000009573 I 0.703
Minc05218 Meloidogyne incognita Minc05218 N 0.702
PABPC1L Oryzias latipes ENSORLG00000010322 I 0.700