CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
CRE22405
(
Caenorhabditis remanei
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
CRE22405
T34437_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CRE22405
RRM
57
127
LYIGDLHPDVTESMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDTMNFEVIHGRPMR
CRE22405
RRM
145
214
IFIKNLDRVIDNKSIYDTFSLFGNILSCKVATDEEGNSKGYGFVHFETEASALTAIEKVNGMLLSDKKVF
CRE22405
RRM
238
307
VFIKNFGDHLDEKKLTEMFSKYGEITSAVVMTDNSGKPKGFGFVAFVDPDAAIKAVDTLNESTLEGTDLK
CRE22405
RRM
343
412
LYVKNIEEEMTDDGLREHFANFGSITSAKVMVDENGRSKGFGFVCFEKPEEATAAVTEMNSKMIGAKPLY
Links
Other
RRM
family RBPs
Other
Caenorhabditis remanei
RBPs
13 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CBN18184
Caenorhabditis brenneri
CBN18184
N
0.915
CBG07431
Caenorhabditis briggsae
CBG07431
N
0.890
pab-2
Caenorhabditis elegans
F18H3.3
N
0.883
CJA16600
Caenorhabditis japonica
CJA16600
N
0.879
CJA17800
Caenorhabditis japonica
CJA17800
N
0.758
CBN04295
Caenorhabditis brenneri
CBN04295
I
0.758
pab-1
Caenorhabditis elegans
Y106G6H.2
I
0.758
CBG02207
Caenorhabditis briggsae
CBG02207
N
0.751
LOAG_01058
Loa loa
LOAG_01058
I
0.726
Bm1_16080
Brugia malayi
Bm1_16080
I
0.726
Bm1_06880
Brugia malayi
Bm1_06880
I
0.722
ISCW014211
Ixodes scapularis
ISCW014211
I
0.701
Minc05218
Meloidogyne incognita
Minc05218
N
0.701