ISCW014211 (Ixodes scapularis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ISCW014211 T44861_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.754
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.754
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.754
pAbp
M130_0.6 		Drosophila melanogaster GAAAAHV RNAcompete
Ray et al.(2013)
RNCMPT00139 		0.751
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.750
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.708
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ISCW014211-PA RRM 13 83
ISCW014211-PA RRM 101 170
ISCW014211-PA RRM 194 263
ISCW014211-PA RRM 297 366

Links

Other RRM family RBPs
Other Ixodes scapularis RBPs

150 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
amel4_ncbi_hmm1700 Apis mellifera amel4_ncbi_hmm1700 I 0.805
BGIBMGA003469 Bombyx mori BGIBMGA003469 I 0.805
amel4_ncbi_hmm1364 Apis mellifera amel4_ncbi_hmm1364 I 0.805
amel4_ncbi_hmm2036 Apis mellifera amel4_ncbi_hmm2036 I 0.805
nasonia_NCBI_hmm390743 Nasonia vitripennis nasonia_NCBI_hmm390743 I 0.791
nasonia_NCBI_hmm394743 Nasonia vitripennis nasonia_NCBI_hmm394743 I 0.791
GH21052 Drosophila grimshawi FBgn0128514 I 0.791
AAEL010318 Aedes aegypti AAEL010318 I 0.791
nasonia_NCBI_hmm386743 Nasonia vitripennis nasonia_NCBI_hmm386743 I 0.791
BDE_estExt_fgenesh1_pg.C_380037 Daphnia pulex BDE_estExt_fgenesh1_pg.C_380037 I 0.790
CpipJ_CPIJ007980 Culex pipiens CpipJ_CPIJ007980 I 0.787
PHUM617090 Pediculus humanus PHUM617090 I 0.787
gw.1.65.1 Branchiostoma floridae gw.1.65.1 I 0.787
e_gw.313.40.1 Branchiostoma floridae e_gw.313.40.1 I 0.787
CPIJ007980 Culex quinquefasciatus CPIJ007980 I 0.787
GJ21671 Drosophila virilis FBgn0208790 I 0.777
AGAP011092 Anopheles gambiae AGAP011092 I 0.773
e_gw1.115.135.1 Lottia gigantea e_gw1.115.135.1 I 0.772
GK19652 Drosophila willistoni FBgn0221650 I 0.770
GI18654 Drosophila mojavensis FBgn0141393 I 0.770
pabpc1a Danio rerio ENSDARG00000017219 I 0.768
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.768
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.768
PABPC4 Gallus gallus ENSGALG00000003800 I 0.768
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.764
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.764
GF12652 Drosophila ananassae FBgn0089688 I 0.762
estExt_Genewise1.C_sca_1150143 Lottia gigantea estExt_Genewise1.C_sca_1150143 I 0.762
pabpc1b Danio rerio ENSDARG00000021140 I 0.761
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.761
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.761
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.761
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.761
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.761
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.761
AAH73435 Xenopus laevis AAH73435 I 0.761
estExt_Genewise1.C_1790010 Capitella teleta estExt_Genewise1.C_1790010 I 0.759
GG21846 Drosophila erecta FBgn0114024 I 0.759
GA18673-RA Drosophila pseudoobscura FBgn0078673 I 0.759
GL11548 Drosophila persimilis FBgn0149157 I 0.759
GE11925 Drosophila yakuba FBgn0229707 I 0.759
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.757
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.757
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.757
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.757
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.757
AAH72110 Xenopus laevis AAH72110 I 0.757
LOC100054235 Equus caballus ENSECAG00000009396 I 0.757
PABPC1 Homo sapiens ENSG00000070756 D 0.757
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.757
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.757
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.757
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.757
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.757
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.757
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.757
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.757
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.757
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.757
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.757
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.757
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.757
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.757
AAH52100 Xenopus laevis AAH52100 I 0.757
P20965 Xenopus laevis P20965 I 0.757
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.757
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.757
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.757
Q6IP09 Xenopus laevis Q6IP09 I 0.757
AAI08463 Xenopus laevis AAI08463 I 0.757
CAA40721 Xenopus laevis CAA40721 I 0.757
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.757
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.757
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.757
GD11341 Drosophila simulans FBgn0183090 I 0.755
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.754
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.754
AAA60936 Xenopus laevis AAA60936 I 0.754
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.754
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.754
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.754
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.754
PABPC4 Homo sapiens ENSG00000090621 D 0.754
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.754
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.754
pabpc4 Danio rerio ENSDARG00000059259 I 0.754
Gm10110 Mus musculus ENSMUSG00000062093 I 0.754
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.754
GM21847 Drosophila sechellia FBgn0176724 I 0.752
pAbp Drosophila melanogaster FBgn0261619 D 0.752
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.750
DGIL_AUG5s5076g2t1 Acyrtosiphon pisum DGIL_AUG5s5076g2t1 I 0.748
XP_801795.2 Strongylocentrotus purpuratus XP_801795.2 I 0.747
XP_001177907.1 Strongylocentrotus purpuratus XP_001177907.1 I 0.747
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.743
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.743
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.743
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.743
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.739
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.739
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.739
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.739
fgenesh1_pm.scaffold_278000002 Nematostella vectensis fgenesh1_pm.scaffold_278000002 I 0.737
Bm1_06880 Brugia malayi Bm1_06880 I 0.737
LOAG_01058 Loa loa LOAG_01058 I 0.737
Bm1_16080 Brugia malayi Bm1_16080 I 0.737
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.736
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.736
Pabpc2 Rattus norvegicus ENSRNOG00000014527 I 0.736
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.734
185682 Helobdella robusta 185682 I 0.730
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.729
XP_002156940.1 Hydra magnipapillata XP_002156940.1 I 0.722
Minc05218 Meloidogyne incognita Minc05218 N 0.722
XP_002156904.1 Hydra magnipapillata XP_002156904.1 I 0.722
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.722
CBN04295 Caenorhabditis brenneri CBN04295 I 0.719
PABPC3 Macaca mulatta ENSMMUG00000020835 I 0.718
PABPC1L Anolis carolinensis ENSACAG00000011841 I 0.718
DGIL_AUG5s1591g1t1 Acyrtosiphon pisum DGIL_AUG5s1591g1t1 I 0.716
DGIL_AUG5s9152g1t1 Acyrtosiphon pisum DGIL_AUG5s9152g1t1 I 0.716
CBG02207 Caenorhabditis briggsae CBG02207 N 0.715
ENSCING00000002796 Ciona intestinalis ENSCING00000002796 I 0.715
AAH80020 Xenopus laevis AAH80020 I 0.715
Q2VIP2_PANTR Pan troglodytes ENSPTRG00000022593 I 0.715
AAK29408 Xenopus laevis AAK29408 I 0.715
PABPC1L Meleagris gallopavo ENSMGAG00000003674 I 0.715
Q98SP8 Xenopus laevis Q98SP8 I 0.715
ENSACAG00000002544 Anolis carolinensis ENSACAG00000002544 I 0.715
PABPC1L Gallus gallus ENSGALG00000004123 I 0.715
CJA17800 Caenorhabditis japonica CJA17800 N 0.712
Pabpc6 Mus musculus ENSMUSG00000046173 I 0.711
pabpc1l Danio rerio ENSDARG00000002597 I 0.711
PABPC1L Gasterosteus aculeatus ENSGACG00000002792 I 0.711
PABPC1L Macropus eugenii ENSMEUG00000007905 I 0.708
PABPC3 Homo sapiens ENSG00000151846 D 0.708
Q6GR16 Xenopus laevis Q6GR16 I 0.708
Pabpc3 Rattus norvegicus ENSRNOG00000017367 I 0.708
AAH71118 Xenopus laevis AAH71118 I 0.708
PABPC1L Taeniopygia guttata ENSTGUG00000005114 I 0.707
69344 Helobdella robusta 69344 I 0.705
ENSCSAVG00000004246 Ciona savignyi ENSCSAVG00000004246 I 0.705
e_gw1.7.538.1 Trichoplax adhaerens e_gw1.7.538.1 I 0.705
PABPC1L Takifugu rubripes ENSTRUG00000011085 I 0.704
CRE22405 Caenorhabditis remanei CRE22405 N 0.701
Aqu1.221418 Amphimedon queenslandica Aqu1.221418 N 0.701
pabpc4 Xenopus tropicalis ENSXETG00000010946 I 0.701
pabpc1l Xenopus tropicalis ENSXETG00000022831 I 0.701
PABPC1L Monodelphis domestica ENSMODG00000016198 I 0.701
PABPC1L Sus scrofa ENSSSCG00000007382 I 0.701