CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CIMG_00743
(
Coccidioides immitis
)
S1
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00575 (S1)
IPR003029
CIMG_00743
T59868_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CIMG_00743T0
S1
254
328
RPILYKVYDGRVTGIKDFGAFVNLQGVRGKVDGLVHVSAMQDGARVNHPSDLVSRAQPVKVKVVSIQGPRIGLSM
Links
Other
S1
family RBPs
Other
Coccidioides immitis
RBPs
31 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CPSG_07949
Coccidioides posadasii
CPSG_07949
N
0.974
UREG_00720
Uncinocarpus reesii
UREG_00720
N
0.908
ATEG_07640
Aspergillus terreus
CADATEAG00000474
N
0.882
NFIA_076400
Neosartorya fischeri
CADNFIAG00008573
N
0.882
AFLA_119410
Aspergillus flavus
CADAFLAG00012513
N
0.868
AO090010000458
Aspergillus oryzae
CADAORAG00004519
N
0.868
AFUA_5G10830
Aspergillus fumigatus
CADAFUAG00006235
N
0.868
An14g03770
Aspergillus niger
CADANGAG00011313
N
0.855
TRV_06617
Trichophyton verrucosum
TRV_06617
N
0.855
TESG_05437
Trichophyton tonsurans
TESG_05437
N
0.855
ARB_03894
Arthroderma benhamiae
ARB_03894
N
0.855
PMAA_073440
Penicillium marneffei
PMAA_073440
N
0.842
PABG_04784
Paracoccidioides brasiliensis
PABG_04784
N
0.842
MGYG_03171
Microsporum gypseum
MGYG_03171
N
0.842
ACLA_013700
Aspergillus clavatus
CADACLAG00000914
N
0.842
TERG_04997
Trichophyton rubrum
TERG_04997
N
0.842
ANIA_04721
Aspergillus nidulans
CADANIAG00005708
N
0.829
BDBG_08912
Blastomyces dermatitidis
BDBG_08912
N
0.816
Pc21g10420
Penicillium chrysogenum
Pc21g10420
N
0.803
HCAG_00961
Histoplasma capsulatum
HCAG_00961
N
0.803
estExt_fgenesh2_pg.C_30399
Neurospora discreta
estExt_fgenesh2_pg.C_30399
N
0.750
SS1G_13866
Sclerotinia sclerotiorum
SS1G_13866
N
0.750
fgenesh1_pg.C_chr_9000466
Mycosphaerella graminicola
fgenesh1_pg.C_chr_9000466
N
0.750
NCU06318
Neurospora crassa
NCU06318
N
0.737
estExt_fgenesh1_pg.C_40021
Neurospora tetrasperma
estExt_fgenesh1_pg.C_40021
N
0.724
TEQG_01284
Trichophyton equinum
TEQG_01284
N
0.724
MGG_08807
Magnaporthe oryzae
MGG_08807
N
0.724
VDAG_07985
Verticillium dahliae
VDAG_07985
N
0.711
BC1G_13853
Botrytis cinerea
BC1G_13853
N
0.711
SNOG_08693
Stagonospora nodorum
SNOG_08693
N
0.711
EAT83861.1
Phaeosphaeria nodorum
EAT83861.1
N
0.711