fgeneshHS_pg.scaffold_37000098 (Naegleria gruberi)
S1

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00575 (S1) IPR003029 fgeneshHS_pg.scaffold_37000098 T61266_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgeneshHS_pg.scaffold_37000098 S1 16 91

Links

Other S1 family RBPs
Other Naegleria gruberi RBPs

184 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SPPG_00622 Spizellomyces punctatus SPPG_00622 I 0.763
fgenesh1_pm.C_scaffold_10000060 Batrachochytrium dendrobatidis fgenesh1_pm.C_scaffold_10000060 I 0.763
genemark.2222_g Pleurotus ostreatus genemark.2222_g I 0.750
estExt_fgenesh2_kg.C_21286 Serpula lacrymans estExt_fgenesh2_kg.C_21286 I 0.750
e_gw1.3.2112.1 Cryphonectria parasitica e_gw1.3.2112.1 I 0.750
estExt_Genewise1.C_100122 Postia placenta estExt_Genewise1.C_100122 I 0.750
estExt_fgenesh1_kg.C_130002 Sporobolomyces roseus estExt_fgenesh1_kg.C_130002 I 0.750
THAPSDRAFT_105 Thalassiosira pseudonana Thaps105 I 0.750
EIF2S1 Tursiops truncatus ENSTTRG00000015806 I 0.750
PredSwiss_EST393.1 Pneumocystis carinii PredSwiss_EST393.1 I 0.750
estExt_fgenesh1_pm.C_210071 Selaginella moellendorfii estExt_fgenesh1_pm.C_210071 I 0.750
e_gww2.12.213.1 Phanerochaete chrysosporium e_gww2.12.213.1 I 0.750
fgenesh1_pg.C_scaffold_2000543 Melampsora laricis populina fgenesh1_pg.C_scaffold_2000543 I 0.750
GRMZM2G083262 Zea mays GRMZM2G083262 I 0.737
EIF2S1 Microcebus murinus ENSMICG00000010793 I 0.737
EIF2S1 Macaca mulatta ENSMMUG00000021419 I 0.737
EIF2S1 Meleagris gallopavo ENSMGAG00000011974 I 0.737
EIF2S1 Loxodonta africana ENSLAFG00000013423 I 0.737
IF2A_CHICK Gallus gallus ENSGALG00000009565 I 0.737
EIF2S1 Gorilla gorilla ENSGGOG00000001603 I 0.737
estExt_fgenesh2_kg.C_40048 Neurospora tetrasperma estExt_fgenesh2_kg.C_40048 I 0.737
EIF2S1 Monodelphis domestica ENSMODG00000009911 I 0.737
EIF2S1 Ochotona princeps ENSOPRG00000004520 I 0.737
EIF2S1 Oryzias latipes ENSORLG00000011844 I 0.737
fgenesh1_pm.C_scaffold_69000005 Phytophthora ramorum fgenesh1_pm.C_scaffold_69000005 I 0.737
IF2A_RABIT Oryctolagus cuniculus ENSOCUG00000012023 I 0.737
EIF2S1 Ornithorhynchus anatinus ENSOANG00000005409 I 0.737
Eif2s1 Mus musculus ENSMUSG00000021116 I 0.737
CHGG_04762 Chaetomium globosum CHGG_04762 I 0.737
EIF2S1 Gasterosteus aculeatus ENSGACG00000008569 I 0.737
EIF2S1 Homo sapiens ENSG00000134001 I 0.737
EIF2S1 Canis familiaris ENSCAFG00000016386 I 0.737
LOC100399114 Callithrix jacchus ENSCJAG00000015368 I 0.737
EIF2S1 Cavia porcellus ENSCPOG00000003313 I 0.737
IF2A_BOVIN Bos taurus ENSBTAG00000016311 I 0.737
EIF2S1 Anolis carolinensis ENSACAG00000005994 I 0.737
BRADI1G16700 Brachypodium distachyon BRADI1G16700 I 0.737
BGIOSIBCE010732 Oryza indica BGIOSIBCE010732 I 0.737
eif2s1l Danio rerio ENSDARG00000005827 I 0.737
eif2s1 Danio rerio ENSDARG00000052178 I 0.737
LOC100052709 Equus caballus ENSECAG00000018424 I 0.737
EIF2S1 Erinaceus europaeus ENSEEUG00000010225 I 0.737
EIF2S1 Echinops telfairi ENSETEG00000019003 I 0.737
GRMZM2G058138 Zea mays GRMZM2G058138 I 0.737
PITG_07885 Phytophthora infestans PITG_07885 I 0.737
Eif2s1 Dipodomys ordii ENSDORG00000002382 I 0.737
estExt_fgenesh1_kg.C_10157 Myceliophthora thermophila estExt_fgenesh1_kg.C_10157 I 0.737
estExt_fgenesh3_kg.C_30291 Neurospora discreta estExt_fgenesh3_kg.C_30291 I 0.737
EIF2S1 Procavia capensis ENSPCAG00000002613 I 0.737
estExt_fgenesh2_pm.C_120283 Heterobasidion annosum estExt_fgenesh2_pm.C_120283 I 0.737
NCU08277 Neurospora crassa NCU08277 I 0.737
Q7ZTK4 Xenopus laevis Q7ZTK4 I 0.737
EIF2S1 Takifugu rubripes ENSTRUG00000017958 I 0.737
EIF2S1 Tetraodon nigroviridis ENSTNIG00000012223 I 0.737
SB01G038230 Sorghum bicolor Sb01g038230 I 0.737
Ame_R013633 Ailuropoda melanoleuca Ame_R013633 I 0.737
estExt_GenewiseH_1.C_750056 Nematostella vectensis estExt_GenewiseH_1.C_750056 I 0.737
cassava7658.valid.m1 Manihot esculenta cassava7658.valid.m1 I 0.737
cassava7659.valid.m1 Manihot esculenta cassava7659.valid.m1 I 0.737
estExt_Genewise1Plus.C_10999 Thielavia terrestris estExt_Genewise1Plus.C_10999 I 0.737
e_gw.114.57.1 Nematostella vectensis e_gw.114.57.1 I 0.737
KLTH0B02002g Kluyveromyces thermotolerans KLTH0B02002g I 0.737
LOC_Os03g18510 Oryza sativa LOC_Os03g18510 I 0.737
Kwal_15422 Kluyveromyces waltii Kwal_15422 I 0.737
EIF2S1 Sus scrofa ENSSSCG00000002289 I 0.737
Eif2s1 Rattus norvegicus ENSRNOG00000009432 I 0.737
EIF2S1 Pan troglodytes ENSPTRG00000006462 I 0.737
AAH46576 Xenopus laevis AAH46576 I 0.737
ENSPPYG00000005921 Pongo pygmaeus ENSPPYG00000005921 I 0.737
PMAA_021520 Penicillium marneffei PMAA_021520 I 0.737
EIF2S1 Sorex araneus ENSSARG00000011682 I 0.737
EIF2S1 Spermophilus tridecemlineatus ENSSTOG00000001565 I 0.737
EIF2S1 Taeniopygia guttata ENSTGUG00000011542 I 0.737
Pa_6_5980 Podospora anserina Pa_6_5980 I 0.737
fgenesh1_pg.scaffold_55000187 Physcomitrella patens fgenesh1_pg.scaffold_55000187 I 0.737
Glyma18g02820.1 Glycine max Glyma18g02820.1 I 0.724
NFIA_063860 Neosartorya fischeri CADNFIAG00005762 I 0.724
29607.m000238 Ricinus communis 29607.m000238 I 0.724
ANIA_03156 Aspergillus nidulans CADANIAG00009914 I 0.724
ATEG_04051 Aspergillus terreus CADATEAG00009463 I 0.724
Cucsa.239320 Cucumis sativus Cucsa.239320 I 0.724
e_gwh1.12.106.1 Laccaria bicolor e_gwh1.12.106.1 I 0.724
Glyma11g35600.1 Glycine max Glyma11g35600.1 I 0.724
B9HSK1_POPTR Populus trichocarpa POPTR_0010s19230 I 0.724
B9HHU6_POPTR Populus trichocarpa POPTR_0008s07250 I 0.724
GSVIVG00024676001 Vitis vinifera GSVIVG00024676001 I 0.724
XM_002881666.1 Arabidopsis lyrata fgenesh2_kg.4__2141__AT2G40290.1 I 0.724
ENSCHOG00000009030 Choloepus hoffmanni ENSCHOG00000009030 I 0.724
EIF2S1 Pteropus vampyrus ENSPVAG00000003040 I 0.724
ENSCHOG00000003744 Choloepus hoffmanni ENSCHOG00000003744 I 0.724
UREG_00217 Uncinocarpus reesii UREG_00217 I 0.724
ppa008120m Prunus persica ppa008120m I 0.724
SAKL0G14058g Lachancea kluyveri SAKL0G14058g I 0.724
MDP0000663428 Malus x domestica MDP0000663428 I 0.724
LjSGA_031492.1 Lotus japonicus LjSGA_031492.1 I 0.724
GSTUMT00002346001 Tuber melanosporum GSTUMT00002346001 I 0.724
KLLA0A11814g Kluyveromyces lactis KLLA0A11814g I 0.724
XP_002156465.1 Hydra magnipapillata XP_002156465.1 I 0.724
XP_002492289.1 Pichia pastoris XP_002492289.1 I 0.724
BC1G_14334 Botrytis cinerea BC1G_14334 I 0.724
AFLA_020350 Aspergillus flavus CADAFLAG00003920 I 0.724
ARB_05709 Arthroderma benhamiae ARB_05709 I 0.724
ZYRO0G12056g Zygosaccharomyces rouxii ZYRO0G12056g I 0.724
estExt_fgenesh4_pg.C_220183 Volvox carteri estExt_fgenesh4_pg.C_220183 I 0.724
fgenesh1_pm.00077_#_3 Aspergillus carbonarius fgenesh1_pm.00077_#_3 I 0.724
estExt_Genewise1Plus.C_80350 Agaricus bisporus estExt_Genewise1Plus.C_80350 I 0.724
A7TIH9_VANPO Vanderwaltozyma polyspora A7TIH9_VANPO I 0.724
AGR320W Ashbya gossypii AGR320W I 0.724
estExt_Genewise1Plus.C_sca_18_chr2_1_00859 Nectria haematococca estExt_Genewise1Plus.C_sca_18_chr2_1_00859 I 0.724
estExt_gwp_gw1.C_3520018 Physcomitrella patens estExt_gwp_gw1.C_3520018 I 0.724
Scas_Contig617.9 Saccharomyces castellii Scas_Contig617.9 I 0.724
estExt_Genewise1.C_30452 Schizophyllum commune estExt_Genewise1.C_30452 I 0.724
estExt_Genewise1.C_21511 Trichoderma virens estExt_Genewise1.C_21511 I 0.724
estExt_Genewise1.C_10111 Trichoderma reesei estExt_Genewise1.C_10111 I 0.724
estExt_Genewise1.C_100430 Trichoderma atroviride estExt_Genewise1.C_100430 I 0.724
Medtr3g094730 Medicago truncatula Medtr3g094730 I 0.724
Medtr3g094740 Medicago truncatula Medtr3g094740 I 0.724
e_gw1.18.114.1 Tremella mesenterica e_gw1.18.114.1 I 0.724
CC1G_08524 Coprinopsis cinerea CC1G_08524 I 0.724
BDBG_06604 Blastomyces dermatitidis BDBG_06604 I 0.724
TERG_00559 Trichophyton rubrum TERG_00559 I 0.724
TESG_05324 Trichophyton tonsurans TESG_05324 I 0.724
TEQG_01370 Trichophyton equinum TEQG_01370 I 0.724
mgf006782m Mimulus guttatus mgf006782m I 0.724
CIMG_00109 Coccidioides immitis CIMG_00109 I 0.724
TRV_03711 Trichophyton verrucosum TRV_03711 I 0.724
Scas_Contig479.2 Saccharomyces castellii Scas_Contig479.2 I 0.724
PK10564.1 Cannabis sativa PK10564.1 I 0.724
e_gwW.11.341.1 Chlamydomonas reinhardtii e_gwW.11.341.1 I 0.724
VDBG_01622 Verticillium albo atrum VDBG_01622 I 0.724
VDAG_01930 Verticillium dahliae VDAG_01930 I 0.724
MGYG_00686 Microsporum gypseum MGYG_00686 I 0.724
MGG_13200 Magnaporthe oryzae MGG_13200 I 0.724
BRADI1G65210 Brachypodium distachyon BRADI1G65210 N 0.724
estExt_fgenesh1_pm.C_chr_100036 Mycosphaerella graminicola estExt_fgenesh1_pm.C_chr_100036 I 0.724
ACLA_041660 Aspergillus clavatus CADACLAG00004024 I 0.724
CPSG_04829 Coccidioides posadasii CPSG_04829 I 0.724
FOXG_08491 Fusarium oxysporum FOXG_08491 I 0.724
FVEG_06185 Fusarium verticillioides FVEG_06185 I 0.724
MCYG_00123 Microsporum canis MCYG_00123 I 0.724
estExt_fgenesh1_pg.C_20141 Mycosphaerella fijiensis estExt_fgenesh1_pg.C_20141 I 0.724
HCAG_01136 Histoplasma capsulatum HCAG_01136 I 0.724
AT2G40290 Arabidopsis thaliana AT2G40290-TAIR-G I 0.724
GLRG_02833 Colletotrichum graminicola GLRG_02833 I 0.724
cassava16515.m1 Manihot esculenta cassava16515.m1 I 0.711
72304 Aureococcus anophagefferens 72304 I 0.711
estExt_fgenesh2_pm.C_1660010 Branchiostoma floridae estExt_fgenesh2_pm.C_1660010 I 0.711
estExt_fgenesh2_pm.C_5760005 Branchiostoma floridae estExt_fgenesh2_pm.C_5760005 I 0.711
estExt_fgenesh1_pg.C_210136 Cochliobolus heterostrophus C5 estExt_fgenesh1_pg.C_210136 I 0.711
e_gw1.7.228.1 Trichoplax adhaerens e_gw1.7.228.1 I 0.711
fgenesh_newKGs_kg.236__13__EST_ALL.fasta.Contig10263 Emiliania huxleyi fgenesh_newKGs_kg.236__13__EST_ALL.fasta.Contig10263 I 0.711
estExt_Genewise1.C_110295 Coccomyxa C 169 estExt_Genewise1.C_110295 I 0.711
estExt_Genewise1.C_100332 Chlorella vulgaris estExt_Genewise1.C_100332 I 0.711
Cd36_06510 Candida dubliniensis Cd36_06510 I 0.711
MDP0000155133 Malus x domestica MDP0000155133 I 0.711
YALI0B01034g Yarrowia lipolytica YALI0B01034g I 0.711
AMAG_04113 Allomyces macrogynus AMAG_04113 I 0.711
AMAG_01618 Allomyces macrogynus AMAG_01618 I 0.711
CAGL0B03795g Candida glabrata CAGL0B03795g I 0.711
AB05699.1 Alternaria brassicicola AB05699.1 I 0.711
EAT79164.1 Phaeosphaeria nodorum EAT79164.1 I 0.711
PASA_GEN_0500123 Daphnia pulex PASA_GEN_0500123 I 0.711
Medtr3g094720 Medicago truncatula Medtr3g094720 I 0.711
12209_YJR007W Saccharomyces mikatae 12209_YJR007W I 0.711
13294_YJR007W Saccharomyces bayanus 13294_YJR007W I 0.711
12331_YJR007W Saccharomyces paradoxus 12331_YJR007W I 0.711
CLUG_04130 Candida lusitaniae CLUG_04130 I 0.711
CPAG_01889 Candida parapsilosis CPAG_01889 I 0.711
SUI2 Saccharomyces cerevisiae YJR007W I 0.711
ENSCHOG00000004230 Choloepus hoffmanni ENSCHOG00000004230 I 0.711
NCLIV_056550 Neospora caninum NCLIV_056550 I 0.711
TGGT1_089620 Toxoplasma gondii TGGT1_089620 I 0.711
TGVEG_097260 Toxoplasma gondii TGVEG_097260 I 0.711
TGME49_113230 Toxoplasma gondii TGME49_113230 I 0.711
EIF2 Arabidopsis thaliana AT5G05470-TAIR-G I 0.711
SNOG_13280 Stagonospora nodorum SNOG_13280 I 0.711
DEHA0F26235g Debaryomyces hansenii DEHA0F26235g I 0.711
CTRG_04191 Candida tropicalis CTRG_04191 I 0.711
FGSG_06220 Fusarium graminearum FGSG_06220 I 0.711
LELG_00811 Lodderomyces elongisporus LELG_00811 I 0.711
PTRG_05239 Pyrenophora tritici repentis PTRG_05239 I 0.711
SUI2 Candida albicans orf19.6213 I 0.711
69770 Aureococcus anophagefferens 69770 I 0.711
AFUA_3G13480 Aspergillus fumigatus CADAFUAG00005171 I 0.705