CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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YTHDC2
(
Ochotona princeps
)
YTH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF04146 (YTH)
IPR007275
ENSOPRG00000000462
T62100_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSOPRP00000000434
YTH
1328
1417
LVFSVQGSGHFQGFSRMSSEIGREKSQDWGSAGLGGVFKVEWIRKESLPFQSAHHLLNPWNDNKKVQISRDGQELEPQVGEQLLQLWERL
Links
Other
YTH
family RBPs
Other
Ochotona princeps
RBPs
44 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
YTHDC2
Callithrix jacchus
ENSCJAG00000016598
N
0.989
YTHDC2
Bos taurus
ENSBTAG00000014099
N
0.989
YTHDC2
Loxodonta africana
ENSLAFG00000003538
N
0.989
YTHDC2
Oryctolagus cuniculus
ENSOCUG00000012096
N
0.989
YTHDC2
Cavia porcellus
ENSCPOG00000000272
N
0.989
YTHDC2
Macaca mulatta
ENSMMUG00000001376
N
0.989
YTHDC2
Gorilla gorilla
ENSGGOG00000014407
N
0.989
YTHDC2
Echinops telfairi
ENSETEG00000013681
N
0.989
YTHDC2
Equus caballus
ENSECAG00000020630
N
0.989
YTHDC2
Tarsius syrichta
ENSTSYG00000009634
N
0.989
Ythdc2
Mus musculus
ENSMUSG00000034653
N
0.989
YTHDC2
Pteropus vampyrus
ENSPVAG00000012364
N
0.989
YTHDC2
Pan troglodytes
ENSPTRG00000017143
N
0.989
ENSPPYG00000015691
Pongo pygmaeus
ENSPPYG00000015691
N
0.989
YTHDC2
Tupaia belangeri
ENSTBEG00000006872
N
0.989
YTHDC2
Sus scrofa
ENSSSCG00000014211
N
0.989
YTHDC2
Tursiops truncatus
ENSTTRG00000003116
N
0.978
YTHDC2
Vicugna pacos
ENSVPAG00000007516
N
0.978
YTHDC2
Homo sapiens
ENSG00000047188
N
0.978
YTHDC2
Monodelphis domestica
ENSMODG00000015671
N
0.978
YTHDC2
Sorex araneus
ENSSARG00000000924
N
0.978
YTHDC2
Macropus eugenii
ENSMEUG00000004414
N
0.978
YTHDC2
Canis familiaris
ENSCAFG00000000224
N
0.978
YTHDC2
Myotis lucifugus
ENSMLUG00000006106
N
0.967
YTHDC2
Anolis carolinensis
ENSACAG00000007754
N
0.944
YTHDC2
Procavia capensis
ENSPCAG00000007733
N
0.911
ythdc2
Xenopus tropicalis
ENSXETG00000021517
N
0.889
YTHDC2
Taeniopygia guttata
ENSTGUG00000003755
N
0.878
Ythdc2
Dipodomys ordii
ENSDORG00000007057
N
0.856
YTHDC2
Microcebus murinus
ENSMICG00000004030
N
0.856
YTHDC2
Gallus gallus
ENSGALG00000000189
N
0.833
YTHDC2
Otolemur garnettii
ENSOGAG00000001618
N
0.833
ENSOANG00000005058
Ornithorhynchus anatinus
ENSOANG00000005058
N
0.833
YTHDC2
Dasypus novemcinctus
ENSDNOG00000012198
N
0.833
Ame_R012491
Ailuropoda melanoleuca
Ame_R012491
N
0.789
YTHDC2
Choloepus hoffmanni
ENSCHOG00000013323
N
0.778
ENSGACG00000018573
Gasterosteus aculeatus
ENSGACG00000018573
N
0.733
YTHDC2
Erinaceus europaeus
ENSEEUG00000008580
N
0.725
YTHDC2
Takifugu rubripes
ENSTRUG00000006717
N
0.722
YTHDC2
Oryzias latipes
ENSORLG00000019098
N
0.722
GSC2
Danio rerio
ENSDARG00000076491
N
0.714
e_gw.410.37.1
Branchiostoma floridae
e_gw.410.37.1
N
0.700
e_gw.87.3.1
Nematostella vectensis
e_gw.87.3.1
N
0.700
estExt_fgenesh2_pg.C_1230095
Branchiostoma floridae
estExt_fgenesh2_pg.C_1230095
N
0.700