YTHDC1 (Tetraodon nigroviridis)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 ENSTNIG00000013243 T62153_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YTHDC1
M354_0.6 		Homo sapiens KVVURC SELEX
Cook et al.(2011)
969_20167602 		0.866
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000016226 YTH 327 423
ENSTNIP00000016227 YTH 291 387

Links

Other YTH family RBPs
Other Tetraodon nigroviridis RBPs

41 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
YTHDC1 Takifugu rubripes ENSTRUG00000010142 I 0.969
YTHDC1 Gasterosteus aculeatus ENSGACG00000015486 I 0.948
ythdc1 Xenopus tropicalis ENSXETG00000017960 I 0.897
YTHDC1 Meleagris gallopavo ENSMGAG00000010391 I 0.887
YTHDC1 Taeniopygia guttata ENSTGUG00000004452 I 0.887
ythdc1 Danio rerio ENSDARG00000051953 I 0.887
Q5F341_CHICK Gallus gallus ENSGALG00000011795 I 0.887
Ame_R018249 Ailuropoda melanoleuca Ame_R018249 I 0.876
YTHDC1 Otolemur garnettii ENSOGAG00000003362 I 0.876
LOC100066303 Equus caballus ENSECAG00000018303 I 0.876
AAH84321 Xenopus laevis AAH84321 I 0.876
YTHDC1 Oryctolagus cuniculus ENSOCUG00000015886 I 0.876
YTHDC1 Loxodonta africana ENSLAFG00000021592 I 0.876
YTHDC1 Canis familiaris ENSCAFG00000002821 I 0.876
YTHDC1 Ornithorhynchus anatinus ENSOANG00000014398 I 0.876
ENSPPYG00000014726 Pongo pygmaeus ENSPPYG00000014726 I 0.866
YTHDC1 Pan troglodytes ENSPTRG00000016105 I 0.866
YTHDC1 Tupaia belangeri ENSTBEG00000011546 I 0.866
YTHDC1 Sorex araneus ENSSARG00000010960 I 0.866
Ythdc1 Rattus norvegicus ENSRNOG00000001996 I 0.866
YTHDC1 Pteropus vampyrus ENSPVAG00000015551 I 0.866
Ythdc1 Mus musculus ENSMUSG00000035851 I 0.866
YTHDC1 Macaca mulatta ENSMMUG00000002265 I 0.866
Ythdc1 Dipodomys ordii ENSDORG00000013045 I 0.866
YTHDC1 Erinaceus europaeus ENSEEUG00000015466 I 0.866
YTHDC1 Cavia porcellus ENSCPOG00000010929 I 0.866
YTHDC1 Callithrix jacchus ENSCJAG00000009934 I 0.866
Q29RQ7_BOVIN Bos taurus ENSBTAG00000015572 I 0.866
YTHDC1 Vicugna pacos ENSVPAG00000009040 I 0.866
YTHDC1 Homo sapiens ENSG00000083896 D 0.866
YTHDC1 Gorilla gorilla ENSGGOG00000021958 I 0.866
YTHDC1 Tursiops truncatus ENSTTRG00000005083 I 0.866
YTHDC1 Ochotona princeps ENSOPRG00000008986 I 0.856
YTHDC1 Anolis carolinensis ENSACAG00000009697 I 0.845
YTHDC1 Tarsius syrichta ENSTSYG00000011668 I 0.835
ENSMODG00000020754 Monodelphis domestica ENSMODG00000020754 I 0.794
ENSMODG00000014337 Monodelphis domestica ENSMODG00000014337 I 0.763
YTHDC1 Dasypus novemcinctus ENSDNOG00000004949 I 0.711
ENSMODG00000010076 Monodelphis domestica ENSMODG00000010076 I 0.701
ENSMODG00000004117 Monodelphis domestica ENSMODG00000004117 I 0.701