CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
Q9W6Q9_FUGRU
(
Takifugu rubripes
)
CCCH ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1)
IPR000571
IPR000504
ENSTRUG00000017089
T00641_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTRUP00000043777
CCCH ZF
170
195
DVSNCPFFLKTGSCRFGDRCSRKHVY
ENSTRUP00000043777
RRM
242
300
YHDVLPEFKSVGKVLQFKVSCNHEPHLRGNVYVQFETEEQCKEAFIKFNGRWYAGRQLH
ENSTRUP00000043777
CCCH ZF
309
334
WKNAICGLFDRQKCPKGKHCNFLHVF
ENSTRUP00000043778
CCCH ZF
176
201
DVSNCPFFLKTGSCRFGDRCSRKHVY
ENSTRUP00000043778
RRM
248
306
YHDVLPEFKSVGKVLQFKVSCNHEPHLRGNVYVQFETEEQCKEAFIKFNGRWYAGRQLH
ENSTRUP00000043778
CCCH ZF
315
340
WKNAICGLFDRQKCPKGKHCNFLHVF
ENSTRUP00000043779
CCCH ZF
169
194
DVSNCPFFLKTGSCRFGDRCSRKHVY
ENSTRUP00000043779
RRM
241
299
YHDVLPEFKSVGKVLQFKVSCNHEPHLRGNVYVQFETEEQCKEAFIKFNGRWYAGRQLH
ENSTRUP00000043779
CCCH ZF
308
333
WKNAICGLFDRQKCPKGKHCNFLHVF
ENSTRUP00000043780
CCCH ZF
175
200
DVSNCPFFLKTGSCRFGDRCSRKHVY
ENSTRUP00000043780
RRM
247
305
YHDVLPEFKSVGKVLQFKVSCNHEPHLRGNVYVQFETEEQCKEAFIKFNGRWYAGRQLH
ENSTRUP00000043780
CCCH ZF
314
339
WKNAICGLFDRQKCPKGKHCNFLHVF
ENSTRUP00000043781
CCCH ZF
173
198
DVSNCPFFLKTGSCRFGDRCSRKHVY
ENSTRUP00000043781
RRM
245
303
YHDVLPEFKSVGKVLQFKVSCNHEPHLRGNVYVQFETEEQCKEAFIKFNGRWYAGRQLH
ENSTRUP00000043781
CCCH ZF
312
337
WKNAICGLFDRQKCPKGKHCNFLHVF
Links
Other
CCCH ZF,RRM
family RBPs
Other
Takifugu rubripes
RBPs
41 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CBG08763
Caenorhabditis briggsae
CBG08763
N
0.000
CJA00142
Caenorhabditis japonica
CJA00142
N
0.000
CJA00525
Caenorhabditis japonica
CJA00525
N
0.000
CJA00955
Caenorhabditis japonica
CJA00955
N
0.000
CJA02546
Caenorhabditis japonica
CJA02546
N
0.000
CJA02670
Caenorhabditis japonica
CJA02670
N
0.000
CJA02757
Caenorhabditis japonica
CJA02757
N
0.000
CJA03777
Caenorhabditis japonica
CJA03777
N
0.000
CJA04336
Caenorhabditis japonica
CJA04336
N
0.000
CJA05078
Caenorhabditis japonica
CJA05078
N
0.000
CJA05814
Caenorhabditis japonica
CJA05814
N
0.000
CJA07934
Caenorhabditis japonica
CJA07934
N
0.000
CJA10177
Caenorhabditis japonica
CJA10177
N
0.000
CJA10427
Caenorhabditis japonica
CJA10427
N
0.000
CJA11030
Caenorhabditis japonica
CJA11030
N
0.000
CJA12566
Caenorhabditis japonica
CJA12566
N
0.000
CJA12763
Caenorhabditis japonica
CJA12763
N
0.000
CJA13138
Caenorhabditis japonica
CJA13138
N
0.000
CJA13245
Caenorhabditis japonica
CJA13245
N
0.000
CJA13503
Caenorhabditis japonica
CJA13503
N
0.000
CJA13676
Caenorhabditis japonica
CJA13676
N
0.000
CJA15515
Caenorhabditis japonica
CJA15515
N
0.000
CJA17448
Caenorhabditis japonica
CJA17448
N
0.000
CJA18092
Caenorhabditis japonica
CJA18092
N
0.000
CJA18651
Caenorhabditis japonica
CJA18651
N
0.000
CJA19647
Caenorhabditis japonica
CJA19647
N
0.000
CJA21076
Caenorhabditis japonica
CJA21076
N
0.000
CJA21290
Caenorhabditis japonica
CJA21290
N
0.000
CJA21786
Caenorhabditis japonica
CJA21786
N
0.000
CJA22105
Caenorhabditis japonica
CJA22105
N
0.000
CJA23027
Caenorhabditis japonica
CJA23027
N
0.000
CJA23492
Caenorhabditis japonica
CJA23492
N
0.000
CJA23650
Caenorhabditis japonica
CJA23650
N
0.000
CJA23793
Caenorhabditis japonica
CJA23793
N
0.000
CJA23880
Caenorhabditis japonica
CJA23880
N
0.000
CJA24356
Caenorhabditis japonica
CJA24356
N
0.000
CJA24410
Caenorhabditis japonica
CJA24410
N
0.000
CJA25140
Caenorhabditis japonica
CJA25140
N
0.000
CJA26146
Caenorhabditis japonica
CJA26146
N
0.000
CJA27243
Caenorhabditis japonica
CJA27243
N
0.000
CJA27741
Caenorhabditis japonica
CJA27741
N
0.000
CJA28132
Caenorhabditis japonica
CJA28132
N
0.000
CJA29053
Caenorhabditis japonica
CJA29053
N
0.000
CRE02519
Caenorhabditis remanei
CRE02519
N
0.000
CRE03331
Caenorhabditis remanei
CRE03331
N
0.000
CRE06628
Caenorhabditis remanei
CRE06628
N
0.000
CRE09308
Caenorhabditis remanei
CRE09308
N
0.000
CRE11513
Caenorhabditis remanei
CRE11513
N
0.000
CRE13684
Caenorhabditis remanei
CRE13684
N
0.000
CRE29150
Caenorhabditis remanei
CRE29150
N
0.000