B9MYK3_POPTR (Populus trichocarpa)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		POPTR_0004s20030 T00748_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0004s20030.1 CCCH ZF 13 39
POPTR_0004s20030.1 RRM 76 140
POPTR_0004s20030.1 CCCH ZF 149 174

Links

Other CCCH ZF,RRM family RBPs
Other Populus trichocarpa RBPs

72 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
1600010121 Ostreococcus tauri 1600010121 N 0.737
29092.m000448 Ricinus communis 29092.m000448 N 0.873
29991.m000639 Ricinus communis 29991.m000639 N 0.888
30170.m013808 Ricinus communis 30170.m013808 N 0.805
ATU2AF35A Arabidopsis thaliana AT1G27650-TAIR-G N 0.797
U2AF35B Arabidopsis thaliana AT5G42820-TAIR-G N 0.797
BGIOSIBCE020024 Oryza indica BGIOSIBCE020024 N 0.780
BGIOSIBCE030417 Oryza indica BGIOSIBCE030417 N 0.814
BRADI2G16520 Brachypodium distachyon BRADI2G16520 N 0.780
BRADI2G46080 Brachypodium distachyon BRADI2G46080 N 0.754
BRADI4G33870 Brachypodium distachyon BRADI4G33870 N 0.763
cassava12245.valid.m1 Manihot esculenta cassava12245.valid.m1 N 0.881
cassava12246.valid.m1 Manihot esculenta cassava12246.valid.m1 N 0.881
cassava13474.valid.m1 Manihot esculenta cassava13474.valid.m1 N 0.856
cassava23933.valid.m1 Manihot esculenta cassava23933.valid.m1 N 0.822
cassava30765.valid.m1 Manihot esculenta cassava30765.valid.m1 N 0.873
cassava30766.valid.m1 Manihot esculenta cassava30766.valid.m1 N 0.873
cassava34088.m1 Manihot esculenta cassava34088.m1 N 0.873
Chlre2_kg.scaffold_3000449 Chlamydomonas reinhardtii Chlre2_kg.scaffold_3000449 N 0.763
chr1.CM0378.200.nd Lotus japonicus chr1.CM0378.200.nd N 0.847
chr3.CM0396.90.nc Lotus japonicus chr3.CM0396.90.nc N 0.839
Cucsa.083100 Cucumis sativus Cucsa.083100 N 0.873
Cucsa.200060 Cucumis sativus Cucsa.200060 N 0.887
Cucsa.272480 Cucumis sativus Cucsa.272480 N 0.805
estExt_fgenesh3_pg.C_90081 Chlorella NC64A estExt_fgenesh3_pg.C_90081 N 0.758
estExt_fgeneshCV_kg.C_10018 Chlorella vulgaris estExt_fgeneshCV_kg.C_10018 N 0.771
estExt_Genewise1Plus.C_140110 Micromonas pusilla estExt_Genewise1Plus.C_140110 N 0.788
estExt_Genewise1Plus.C_31771 Mucor circinelloides estExt_Genewise1Plus.C_31771 N 0.706
estExt_Genewise1Plus.C_470052 Volvox carteri estExt_Genewise1Plus.C_470052 N 0.754
estExt_gwp_gw1.C_2150084 Physcomitrella patens estExt_gwp_gw1.C_2150084 N 0.831
e_gw1.11.331.1 Ostreococcus RCC809 e_gw1.11.331.1 N 0.763
fgenesh1_kg.1_#_193_#_3831_1_CBOZ_CBPA Coccomyxa C 169 fgenesh1_kg.1_#_193_#_3831_1_CBOZ_CBPA N 0.771
fgenesh1_pm.C_Chr_15000025 Ostreococcus lucimarinus fgenesh1_pm.C_Chr_15000025 N 0.746
fgenesh1_pm.C_scaffold_1000024 Selaginella moellendorfii fgenesh1_pm.C_scaffold_1000024 N 0.864
XM_002877317.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5000707 N 0.856
XM_002890695.1 Arabidopsis lyrata fgenesh2_kg.1__2923__AT1G27650.1 N 0.797
XM_002863687.1 Arabidopsis lyrata fgenesh2_kg.8__553__AT5G42820.1 N 0.797
Glyma03g34840.1 Glycine max Glyma03g34840.1 N 0.873
Glyma07g20090.1 Glycine max Glyma07g20090.1 N 0.780
Glyma12g30590.1 Glycine max Glyma12g30590.1 N 0.890
Glyma19g37530.1 Glycine max Glyma19g37530.1 N 0.873
Glyma20g00950.1 Glycine max Glyma20g00950.1 N 0.778
GRMZM2G020928 Zea mays GRMZM2G020928 N 0.788
GRMZM2G025014 Zea mays GRMZM2G025014 N 0.788
GRMZM2G031827 Zea mays GRMZM2G031827 N 0.788
GRMZM2G162119 Zea mays GRMZM2G162119 N 0.720
GRMZM2G177229 Zea mays GRMZM2G177229 N 0.780
GSVIVG00033771001 Vitis vinifera GSVIVG00033771001 N 0.898
gw1.15.161.1 Physcomitrella patens gw1.15.161.1 N 0.831
gwEuk.2.46.1 Phytophthora ramorum gwEuk.2.46.1 N 0.703
LjB15A13.120.nd Lotus japonicus LjB15A13.120.nd N 0.898
LOC_Os05g48960 Oryza sativa LOC_Os05g48960 N 0.780
LOC_Os09g31482 Oryza sativa LOC_Os09g31482 N 0.814
MDP0000179037 Malus x domestica MDP0000179037 N 0.890
MDP0000284705 Malus x domestica MDP0000284705 N 0.881
MDP0000321343 Malus x domestica MDP0000321343 N 0.797
MDP0000640144 Malus x domestica MDP0000640144 N 0.873
Medtr1g039850 Medicago truncatula Medtr1g039850 N 0.760
mgf001260m Mimulus guttatus mgf001260m N 0.822
mgf001805m Mimulus guttatus mgf001805m N 0.797
mgf003009m Mimulus guttatus mgf003009m N 0.822
mgf004170m Mimulus guttatus mgf004170m N 0.822
mgf010816m Mimulus guttatus mgf010816m N 0.898
PDK_20s1490591g003 Phoenix dactylifera PDK_20s1490591g003 N 0.797
B9GPM3_POPTR Populus trichocarpa POPTR_0002s00480 N 0.790
B9H5X4_POPTR Populus trichocarpa POPTR_0005s27940 N 0.797
POPTR_0006s11790 Populus trichocarpa POPTR_0006s11790 N 0.890
ppa008459m Prunus persica ppa008459m N 0.890
ppa025949m Prunus persica ppa025949m N 0.898
Sb02g028540 Sorghum bicolor Sb02g028540 N 0.797
SB03G030670 Sorghum bicolor Sb03g030670 N 0.780
SB09G028530 Sorghum bicolor Sb09g028530 N 0.788