29223.m000023 (Ricinus communis)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		29223.m000023 T00817_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
29223.m000023 CCCH ZF 195 218
29223.m000023 RRM 361 421

Links

Other CCCH ZF,RRM family RBPs
Other Ricinus communis RBPs

25 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
27613.m000645 Ricinus communis 27613.m000645 N 0.791
AT2G05160 Arabidopsis thaliana AT2G05160-TAIR-G N 0.759
cassava31399.valid.m1 Manihot esculenta cassava31399.valid.m1 N 0.747
cassava31400.valid.m1 Manihot esculenta cassava31400.valid.m1 N 0.747
cassava36931.valid.m1 Manihot esculenta cassava36931.valid.m1 N 0.851
cassava7063.valid.m1 Manihot esculenta cassava7063.valid.m1 N 0.776
estExt_fgenesh2_pg.C_00420 Selaginella moellendorfii estExt_fgenesh2_pg.C_00420 N 0.706
estExt_fgenesh2_pg.C_80472 Selaginella moellendorfii estExt_fgenesh2_pg.C_80472 N 0.718
XM_002876131.1 Arabidopsis lyrata fgenesh2_kg.5__1664__AT3G52980.1 N 0.747
GSVIVG00001467001 Vitis vinifera GSVIVG00001467001 N 0.706
GSVIVG00037782001 Vitis vinifera GSVIVG00037782001 N 0.747
MDP0000214614 Malus x domestica MDP0000214614 N 0.800
MDP0000906147 Malus x domestica MDP0000906147 N 0.770
Medtr4g118330 Medicago truncatula Medtr4g118330 N 0.718
Medtr5g102170 Medicago truncatula Medtr5g102170 N 0.753
mgf003557m Mimulus guttatus mgf003557m N 0.713
PK01281.1 Cannabis sativa PK01281.1 N 0.741
PK20504.1 Cannabis sativa PK20504.1 N 0.776
POPTR_0001s05760 Populus trichocarpa POPTR_0001s05760 N 0.706
B9GTF9_POPTR Populus trichocarpa POPTR_0002s22240 N 0.770
B9GWA9_POPTR Populus trichocarpa POPTR_0003s20310 N 0.706
B9HNZ4_POPTR Populus trichocarpa POPTR_0009s05520 N 0.718
B9IAR9_POPTR Populus trichocarpa POPTR_0014s16340 N 0.851
ppa003564m Prunus persica ppa003564m N 0.800
ppa019338m Prunus persica ppa019338m N 0.759