Medtr4g118330 (Medicago truncatula)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		Medtr4g118330 T01028_0.6 PlantGDB (2010-Oct-15)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Medtr4g118330.1 CCCH ZF 188 210
Medtr4g118330.1 RRM 332 391

Links

Other CCCH ZF,RRM family RBPs
Other Medicago truncatula RBPs

73 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma12g01350.1 Glycine max Glyma12g01350.1 N 0.916
Glyma12g01340.1 Glycine max Glyma12g01340.1 N 0.916
Glyma09g35980.1 Glycine max Glyma09g35980.1 N 0.916
LjT28K11.10.nd Lotus japonicus LjT28K11.10.nd N 0.916
Glyma09g35990.1 Glycine max Glyma09g35990.1 N 0.916
GSVIVG00001467001 Vitis vinifera GSVIVG00001467001 N 0.916
ppa023263m Prunus persica ppa023263m N 0.904
MDP0000243086 Malus x domestica MDP0000243086 N 0.880
Cucsa.166080 Cucumis sativus Cucsa.166080 N 0.880
cassava30651.valid.m1 Manihot esculenta cassava30651.valid.m1 N 0.869
30169.m006471 Ricinus communis 30169.m006471 N 0.869
cassava30652.valid.m1 Manihot esculenta cassava30652.valid.m1 N 0.869
B9GWA9_POPTR Populus trichocarpa POPTR_0003s20310 N 0.855
MDP0000220601 Malus x domestica MDP0000220601 N 0.855
GRMZM2G346113 Zea mays GRMZM2G346113 N 0.855
B9HNZ4_POPTR Populus trichocarpa POPTR_0009s05520 N 0.845
GSVIVG00031538001 Vitis vinifera GSVIVG00031538001 N 0.845
LOC_Os03g21140 Oryza sativa LOC_Os03g21140 N 0.843
GRMZM2G044004 Zea mays GRMZM2G044004 N 0.843
cassava7294.valid.m1 Manihot esculenta cassava7294.valid.m1 N 0.843
cassava9561.m1 Manihot esculenta cassava9561.m1 N 0.843
cassava7293.valid.m1 Manihot esculenta cassava7293.valid.m1 N 0.843
cassava7292.valid.m1 Manihot esculenta cassava7292.valid.m1 N 0.843
SB08G001980 Sorghum bicolor Sb08g001980 N 0.843
SB05G001540 Sorghum bicolor Sb05g001540 N 0.843
POPTR_0001s05760 Populus trichocarpa POPTR_0001s05760 N 0.843
BGIOSIBCE010969 Oryza indica BGIOSIBCE010969 N 0.843
cassava2158.valid.m1 Manihot esculenta cassava2158.valid.m1 N 0.839
Cucsa.333940 Cucumis sativus Cucsa.333940 N 0.837
GRMZM2G311665 Zea mays GRMZM2G311665 N 0.831
SB01G036490 Sorghum bicolor Sb01g036490 N 0.831
MDP0000256775 Malus x domestica MDP0000256775 N 0.831
SB02G043180 Sorghum bicolor Sb02g043180 N 0.831
BGIOSIBCE026070 Oryza indica BGIOSIBCE026070 N 0.831
B9GI27_POPTR Populus trichocarpa POPTR_0001s26250 N 0.831
MDP0000259773 Malus x domestica MDP0000259773 N 0.831
GRMZM2G086614 Zea mays GRMZM2G086614 N 0.831
LOC_Os07g48410 Oryza sativa LOC_Os07g48410 N 0.831
GRMZM2G003424 Zea mays GRMZM2G003424 N 0.831
mgf014647m Mimulus guttatus mgf014647m N 0.819
BGIOSIBCE010970 Oryza indica BGIOSIBCE010970 N 0.819
LOC_Os03g21160 Oryza sativa LOC_Os03g21160 N 0.819
BRADI4G44040 Brachypodium distachyon BRADI4G44040 N 0.819
ppa002413m Prunus persica ppa002413m N 0.810
MDP0000120231 Malus x domestica MDP0000120231 N 0.810
BRADI1G63570 Brachypodium distachyon BRADI1G63570 N 0.807
BRADI1G17510 Brachypodium distachyon BRADI1G17510 N 0.807
Glyma01g43700.1 Glycine max Glyma01g43700.1 N 0.805
Medtr5g008940 Medicago truncatula Medtr5g008940 N 0.805
Glyma11g01780.1 Glycine max Glyma11g01780.1 N 0.805
MDP0000164538 Malus x domestica MDP0000164538 N 0.802
GRMZM2G368883 Zea mays GRMZM2G368883 N 0.798
MDP0000120462 Malus x domestica MDP0000120462 N 0.798
AT3G51950 Arabidopsis thaliana AT3G51950-TAIR-G N 0.793
XM_002877790.1 Arabidopsis lyrata fgenesh2_kg.5__1545__AT3G51950.1 N 0.793
mgf002273m Mimulus guttatus mgf002273m N 0.788
chr2.CM0018.150.nc Lotus japonicus chr2.CM0018.150.nc N 0.779
PK18074.1 Cannabis sativa PK18074.1 N 0.779
e_gw1.136.54.1 Physcomitrella patens e_gw1.136.54.1 N 0.774
B9GI28_POPTR Populus trichocarpa POPTR_0001s26240 N 0.767
ppa002383m Prunus persica ppa002383m N 0.767
XM_002313318.1 Populus trichocarpa POPTR_0009s05510 N 0.759
cassava2159.valid.m1 Manihot esculenta cassava2159.valid.m1 N 0.756
mgf000973m Mimulus guttatus mgf000973m N 0.753
GRMZM2G132749 Zea mays GRMZM2G132749 N 0.747
30169.m006472 Ricinus communis 30169.m006472 N 0.744
cassava34046.m1 Manihot esculenta cassava34046.m1 N 0.738
cassava36931.valid.m1 Manihot esculenta cassava36931.valid.m1 N 0.736
e_gw1.31.137.1 Physcomitrella patens e_gw1.31.137.1 N 0.726
B9IAR9_POPTR Populus trichocarpa POPTR_0014s16340 N 0.724
29223.m000023 Ricinus communis 29223.m000023 N 0.718
AT5G12440 Arabidopsis thaliana AT5G12440-TAIR-G N 0.714
XM_002873527.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000986 N 0.714