CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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XM_002883888.1
(
Arabidopsis lyrata
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
fgenesh2_kg.3__3143__AT2G20280.1
T03845_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgenesh2_kg.3__3143__AT2G20280.1
CCCH ZF
89
114
PKSILCEFFKAGQCQKGFKCKFSHDL
Links
Other
CCCH ZF
family RBPs
Other
Arabidopsis lyrata
RBPs
130 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAEL010318
Aedes aegypti
AAEL010318
I
0.000
AAH52100
Xenopus laevis
AAH52100
I
0.000
AAH73435
Xenopus laevis
AAH73435
I
0.000
AGAP011092
Anopheles gambiae
AGAP011092
I
0.000
amel4_ncbi_hmm1364
Apis mellifera
amel4_ncbi_hmm1364
I
0.000
amel4_ncbi_hmm1700
Apis mellifera
amel4_ncbi_hmm1700
I
0.000
amel4_ncbi_hmm2036
Apis mellifera
amel4_ncbi_hmm2036
I
0.000
BDE_estExt_fgenesh1_pg.C_380037
Daphnia pulex
BDE_estExt_fgenesh1_pg.C_380037
I
0.000
BGIBMGA003469
Bombyx mori
BGIBMGA003469
I
0.000
Bm1_06880
Brugia malayi
Bm1_06880
I
0.000
Bm1_16080
Brugia malayi
Bm1_16080
I
0.000
CAA40721
Xenopus laevis
CAA40721
I
0.000
CBN04295
Caenorhabditis brenneri
CBN04295
I
0.000
CPIJ007980
Culex quinquefasciatus
CPIJ007980
I
0.000
CpipJ_CPIJ007980
Culex pipiens
CpipJ_CPIJ007980
I
0.000
DGIL_AUG5s1591g1t1
Acyrtosiphon pisum
DGIL_AUG5s1591g1t1
I
0.000
DGIL_AUG5s5076g2t1
Acyrtosiphon pisum
DGIL_AUG5s5076g2t1
I
0.000
DGIL_AUG5s9152g1t1
Acyrtosiphon pisum
DGIL_AUG5s9152g1t1
I
0.000
A4IFC3_BOVIN
Bos taurus
ENSBTAG00000017125
I
0.000
PABPC4
Canis familiaris
ENSCAFG00000003081
I
0.000
A6MKJ4_CALJA
Callithrix jacchus
ENSCJAG00000002512
I
0.000
PABPC4
Cavia porcellus
ENSCPOG00000009552
I
0.000
LOC100054235
Equus caballus
ENSECAG00000009396
I
0.000
PABPC4
Homo sapiens
ENSG00000090621
D
0.000
PABPC4
Gallus gallus
ENSGALG00000003800
I
0.000
PABPC4
Gorilla gorilla
ENSGGOG00000004002
I
0.000
PABPC4
Loxodonta africana
ENSLAFG00000000151
I
0.000
ENSMICG00000000431
Microcebus murinus
ENSMICG00000000431
I
0.000
PABPC4
Macaca mulatta
ENSMMUG00000007497
I
0.000
XM_001365232.1
Monodelphis domestica
ENSMODG00000017657
I
0.000
ENSOANG00000010001
Ornithorhynchus anatinus
ENSOANG00000010001
I
0.000
ENSPPYG00000001506
Pongo pygmaeus
ENSPPYG00000001506
I
0.000
PABPC4
Pan troglodytes
ENSPTRG00000000573
I
0.000
D4AC21_RAT
Rattus norvegicus
ENSRNOG00000015642
I
0.000
PABPC4
Sus scrofa
ENSSSCG00000003660
I
0.000
PABPC4
Taeniopygia guttata
ENSTGUG00000001266
I
0.000
pabpc1
Xenopus tropicalis
ENSXETG00000006635
I
0.000
estExt_Genewise1.C_1790010
Capitella teleta
estExt_Genewise1.C_1790010
I
0.000
e_gw1.115.135.1
Lottia gigantea
e_gw1.115.135.1
I
0.000
GA18673-RA
Drosophila pseudoobscura
FBgn0078673
I
0.000
GF12652
Drosophila ananassae
FBgn0089688
I
0.000
GG21846
Drosophila erecta
FBgn0114024
I
0.000
GH21052
Drosophila grimshawi
FBgn0128514
I
0.000
GI18654
Drosophila mojavensis
FBgn0141393
I
0.000
GL11548
Drosophila persimilis
FBgn0149157
I
0.000
GM21847
Drosophila sechellia
FBgn0176724
I
0.000
GD11341
Drosophila simulans
FBgn0183090
I
0.000
GJ21671
Drosophila virilis
FBgn0208790
I
0.000
GK19652
Drosophila willistoni
FBgn0221650
I
0.000
GE11925
Drosophila yakuba
FBgn0229707
I
0.000
pAbp
Drosophila melanogaster
FBgn0261619
D
0.000
ISCW014211
Ixodes scapularis
ISCW014211
I
0.000
LOAG_01058
Loa loa
LOAG_01058
I
0.000
nasonia_NCBI_hmm386743
Nasonia vitripennis
nasonia_NCBI_hmm386743
I
0.000
nasonia_NCBI_hmm390743
Nasonia vitripennis
nasonia_NCBI_hmm390743
I
0.000
nasonia_NCBI_hmm394743
Nasonia vitripennis
nasonia_NCBI_hmm394743
I
0.000
P20965
Xenopus laevis
P20965
I
0.000
PHUM617090
Pediculus humanus
PHUM617090
I
0.000
pab-1
Caenorhabditis elegans
Y106G6H.2
I
0.000