XM_002883888.1 (Arabidopsis lyrata)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 fgenesh2_kg.3__3143__AT2G20280.1 T03845_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.3__3143__AT2G20280.1 CCCH ZF 89 114

Links

Other CCCH ZF family RBPs
Other Arabidopsis lyrata RBPs

130 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29805.m001499 Ricinus communis 29805.m001499 N 0.962
72073 Helobdella robusta 72073 N 0.808
AAH77826 Xenopus laevis AAH77826 N 0.769
AB07703.1 Alternaria brassicicola AB07703.1 N 0.731
amel4_ncbi_hmm11607 Apis mellifera amel4_ncbi_hmm11607 N 0.769
Ame_R017931 Ailuropoda melanoleuca Ame_R017931 N 0.769
Aqu1.222312 Amphimedon queenslandica Aqu1.222312 N 0.731
ARB_01723 Arthroderma benhamiae ARB_01723 N 0.731
AT2G20280 Arabidopsis thaliana AT2G20280-TAIR-G N 1.000
BAD89267 Xenopus laevis BAD89267 N 0.769
BGIBMGA011604 Bombyx mori BGIBMGA011604 N 0.731
BGIOSIBCE004176 Oryza indica BGIOSIBCE004176 N 0.923
BRADI2G54220 Brachypodium distachyon BRADI2G54220 N 1.000
ATEG_06133 Aspergillus terreus CADATEAG00002525 N 0.731
cassava28857.valid.m1 Manihot esculenta cassava28857.valid.m1 N 0.885
cassava28858.valid.m1 Manihot esculenta cassava28858.valid.m1 N 0.885
cassava3130.m1 Manihot esculenta cassava3130.m1 N 0.885
CBG00292 Caenorhabditis briggsae CBG00292 N 0.769
CBN03898 Caenorhabditis brenneri CBN03898 N 0.769
CBN11546 Caenorhabditis brenneri CBN11546 N 0.769
CC1G_07829 Coprinopsis cinerea CC1G_07829 N 0.731
chr5.LjT08O17.30.nd Lotus japonicus chr5.LjT08O17.30.nd N 0.923
CJA17052 Caenorhabditis japonica CJA17052 N 0.769
CLUG_02796 Candida lusitaniae CLUG_02796 N 0.769
CPAG_03559 Candida parapsilosis CPAG_03559 N 0.769
CRE20408 Caenorhabditis remanei CRE20408 N 0.769
CTRG_02162 Candida tropicalis CTRG_02162 N 0.808
DEHA0A09449g Debaryomyces hansenii DEHA0A09449g N 0.769
DGIL_AUG5s16g7t1 Acyrtosiphon pisum DGIL_AUG5s16g7t1 N 0.808
EFA82915.1 Polysphondylium pallidum EFA82915.1 N 0.846
ZC3H15 Anolis carolinensis ENSACAG00000001916 N 0.731
ZC3HF_BOVIN Bos taurus ENSBTAG00000021762 N 0.769
ZC3H15 Canis familiaris ENSCAFG00000014494 N 0.769
ZC3H15 Choloepus hoffmanni ENSCHOG00000011958 N 0.769
ENSCING00000006888 Ciona intestinalis ENSCING00000006888 N 0.731
ZC3H15 Callithrix jacchus ENSCJAG00000005931 N 0.769
ENSCPOG00000012965 Cavia porcellus ENSCPOG00000012965 N 0.769
zc3h15 Danio rerio ENSDARG00000015889 N 0.808
ZC3H15 Dasypus novemcinctus ENSDNOG00000018840 N 0.731
Zc3h15 Dipodomys ordii ENSDORG00000011664 N 0.769
LOC100068634 Equus caballus ENSECAG00000017149 N 0.769
ENSETEG00000015556 Echinops telfairi ENSETEG00000015556 N 0.769
ZC3H15 Felis catus ENSFCAG00000008213 N 0.769
ZC3H15 Homo sapiens ENSG00000065548 N 0.769
ZC3H15 Gasterosteus aculeatus ENSGACG00000011648 N 0.808
ZC3HF_CHICK Gallus gallus ENSGALG00000002670 N 0.769
ZC3H15 Gorilla gorilla ENSGGOG00000000073 N 0.769
ENSLAFG00000001563 Loxodonta africana ENSLAFG00000001563 N 0.769
ZC3H15 Meleagris gallopavo ENSMGAG00000004447 N 0.769
ZC3H15 Microcebus murinus ENSMICG00000014245 N 0.769
ZC3H15 Myotis lucifugus ENSMLUG00000007741 N 0.769
ZC3H15 Macaca mulatta ENSMMUG00000017248 N 0.769
ITGAV Monodelphis domestica ENSMODG00000010653 N 0.769
Zc3h15 Mus musculus ENSMUSG00000027091 N 0.769
ZC3H15 Ornithorhynchus anatinus ENSOANG00000015742 N 0.769
ENSOCUG00000011903 Oryctolagus cuniculus ENSOCUG00000011903 N 0.769
ENSOCUG00000011909 Oryctolagus cuniculus ENSOCUG00000011909 N 0.731
ZC3H15 Otolemur garnettii ENSOGAG00000002182 N 0.769
ENSOPRG00000015790 Ochotona princeps ENSOPRG00000015790 N 0.769
ZC3H15 Oryzias latipes ENSORLG00000018606 N 0.808
ZC3H15 Procavia capensis ENSPCAG00000008499 N 0.769
ENSPPYG00000013004 Pongo pygmaeus ENSPPYG00000013004 N 0.769
ZC3H15 Pan troglodytes ENSPTRG00000012717 N 0.769
ZC3H15 Pteropus vampyrus ENSPVAG00000004828 N 0.769
Zc3h15 Rattus norvegicus ENSRNOG00000005256 N 0.769
RGD1564243 Rattus norvegicus ENSRNOG00000015276 N 0.731
ZC3H15 Sorex araneus ENSSARG00000012071 N 0.769
ZC3H15 Sus scrofa ENSSSCG00000016026 N 0.769
ZC3H15 Spermophilus tridecemlineatus ENSSTOG00000006873 N 0.769
ZC3H15 Tupaia belangeri ENSTBEG00000015530 N 0.769
ZC3H15 Taeniopygia guttata ENSTGUG00000011131 N 0.769
ZC3H15 Tetraodon nigroviridis ENSTNIG00000009860 N 0.769
ZC3H15 Takifugu rubripes ENSTRUG00000004988 N 0.808
ZC3H15 Tarsius syrichta ENSTSYG00000011019 N 0.769
ZC3H15 Tursiops truncatus ENSTTRG00000012425 N 0.769
ZC3H15 Vicugna pacos ENSVPAG00000006980 N 0.769
zc3h15 Xenopus tropicalis ENSXETG00000013336 N 0.731
estExt_fgenesh1_pm.C_180201 Phytophthora capsici estExt_fgenesh1_pm.C_180201 N 0.731
estExt_fgenesh1_pm.C_chr_90145 Mycosphaerella graminicola estExt_fgenesh1_pm.C_chr_90145 N 0.731
estExt_Genewise1.C_60471 Cochliobolus heterostrophus C5 estExt_Genewise1.C_60471 N 0.731
estExt_Genewise1Plus.C_31385 Mycosphaerella fijiensis estExt_Genewise1Plus.C_31385 N 0.731
estExt_Genewise1Plus.C_sca_2280007 Lottia gigantea estExt_Genewise1Plus.C_sca_2280007 N 0.769
estExt_gwp.C_6160004 Branchiostoma floridae estExt_gwp.C_6160004 N 0.731
e_gw.53.202.1 Nematostella vectensis e_gw.53.202.1 N 0.769
e_gw1.19.91.1 Melampsora laricis populina e_gw1.19.91.1 N 0.731
e_gw1.2.668.1 Sporobolomyces roseus e_gw1.2.668.1 N 0.808
e_gw1.3.744.1 Selaginella moellendorfii e_gw1.3.744.1 N 0.769
e_gw1.8.939.1 Pleurotus ostreatus e_gw1.8.939.1 N 0.769
F27D4.4 Caenorhabditis elegans F27D4.4 N 0.769
GD10149 Drosophila simulans FBgn0181924 N 0.731
GK21573 Drosophila willistoni FBgn0223565 N 0.731
fgenesh1_pg.C_scaffold_3139000003 Phytophthora capsici fgenesh1_pg.C_scaffold_3139000003 N 0.731
Glyma03g33420.1 Glycine max Glyma03g33420.1 N 0.923
Glyma10g05550.1 Glycine max Glyma10g05550.1 N 0.923
Glyma13g19900.1 Glycine max Glyma13g19900.1 N 0.885
Glyma19g36150.1 Glycine max Glyma19g36150.1 N 0.923
GRMZM2G032258 Zea mays GRMZM2G032258 N 1.000
GSVIVG00016357001 Vitis vinifera GSVIVG00016357001 N 0.885
gw1.1.348.1 Phycomyces blakesleeanus gw1.1.348.1 N 0.731
gw1.233.15.1 Physcomitrella patens gw1.233.15.1 N 0.808
gwh2.4.391.1 Phanerochaete chrysosporium gwh2.4.391.1 N 0.769
LOC_Os01g61830 Oryza sativa LOC_Os01g61830 N 0.923
MCYG_02954 Microsporum canis MCYG_02954 N 0.731
MDP0000161236 Malus x domestica MDP0000161236 N 0.923
MGG_07010 Magnaporthe oryzae MGG_07010 N 0.731
MGYG_00125 Microsporum gypseum MGYG_00125 N 0.731
Minc08580 Meloidogyne incognita Minc08580 N 0.769
nasonia_NCBI_hmm1144383 Nasonia vitripennis nasonia_NCBI_hmm1144383 N 0.769
PASA_GEN_1200032 Daphnia pulex PASA_GEN_1200032 N 0.769
Pa_3_8730 Podospora anserina Pa_3_8730 N 0.731
PDK_20s1366191g001 Phoenix dactylifera PDK_20s1366191g001 N 1.000
PGUG_02031 Candida guilliermondii PGUG_02031 N 0.808
PHUM521160 Pediculus humanus PHUM521160 N 0.731
PITG_04608 Phytophthora infestans PITG_04608 N 0.769
PK12342.1 Cannabis sativa PK12342.1 N 0.923
POPTR_0006s13510 Populus trichocarpa POPTR_0006s13510 N 0.923
B9HM02_POPTR Populus trichocarpa POPTR_0008s04540 N 0.962
B9MT73_POPTR Populus trichocarpa POPTR_0308s00200 N 0.923
ppa007639m Prunus persica ppa007639m N 0.923
ppa007903m Prunus persica ppa007903m N 0.923
PTTG_08784 Puccinia triticina PTTG_08784 N 0.731
Q6DD06 Xenopus laevis Q6DD06 N 0.769
SB03G039020 Sorghum bicolor Sb03g039020 N 0.962
SPPG_00188 Spizellomyces punctatus SPPG_00188 N 0.808
s_451242 Phytophthora sojae s_451242 N 0.769
TEQG_08385 Trichophyton equinum TEQG_08385 N 0.731
TERG_01412 Trichophyton rubrum TERG_01412 N 0.731
TESG_03135 Trichophyton tonsurans TESG_03135 N 0.731
TRV_03417 Trichophyton verrucosum TRV_03417 N 0.731
XP_002158150.1 Hydra magnipapillata XP_002158150.1 N 0.731