CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
Glyma13g19900.1
(
Glycine max
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
Glyma13g19900.1
T05441_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Glyma13g19900.1
CCCH ZF
89
114
PKSILCEFYKVGQCAKGFKCKFSHDL
Links
Other
CCCH ZF
family RBPs
Other
Glycine max
RBPs
106 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
BDBG_02075
Blastomyces dermatitidis
BDBG_02075
N
0.000
ACLA_083590
Aspergillus clavatus
CADACLAG00008130
N
0.000
AFUA_6G08820
Aspergillus fumigatus
CADAFUAG00001582
N
0.000
An11g06210
Aspergillus niger
CADANGAG00008954
N
0.000
ANIA_10228
Aspergillus nidulans
CADANIAG00008371
N
0.000
AO090001000554
Aspergillus oryzae
CADAORAG00000508
N
0.000
ATEG_06631
Aspergillus terreus
CADATEAG00009109
N
0.000
NFIA_054470
Neosartorya fischeri
CADNFIAG00005274
N
0.000
CIMG_01358
Coccidioides immitis
CIMG_01358
N
0.000
CPSG_01825
Coccidioides posadasii
CPSG_01825
N
0.000
fgenesh1_pg.00118_#_293
Aspergillus carbonarius
fgenesh1_pg.00118_#_293
N
0.000
HCAG_05763
Histoplasma capsulatum
HCAG_05763
N
0.000
PABG_01879
Paracoccidioides brasiliensis
PABG_01879
N
0.000
Pc12g08810
Penicillium chrysogenum
Pc12g08810
N
0.000
PMAA_064610
Penicillium marneffei
PMAA_064610
N
0.000
TRV_07199
Trichophyton verrucosum
TRV_07199
N
0.000
UREG_01281
Uncinocarpus reesii
UREG_01281
N
0.000