Glyma13g19900.1 (Glycine max)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 Glyma13g19900.1 T05441_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Glyma13g19900.1 CCCH ZF 89 114

Links

Other CCCH ZF family RBPs
Other Glycine max RBPs

106 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29805.m001499 Ricinus communis 29805.m001499 N 0.923
72073 Helobdella robusta 72073 N 0.769
AAH77826 Xenopus laevis AAH77826 N 0.731
amel4_ncbi_hmm11607 Apis mellifera amel4_ncbi_hmm11607 N 0.731
Ame_R017931 Ailuropoda melanoleuca Ame_R017931 N 0.731
Aqu1.222312 Amphimedon queenslandica Aqu1.222312 N 0.769
AT2G20280 Arabidopsis thaliana AT2G20280-TAIR-G N 0.885
BAD89267 Xenopus laevis BAD89267 N 0.731
BC1G_06447 Botrytis cinerea BC1G_06447 N 0.731
BGIBMGA011604 Bombyx mori BGIBMGA011604 N 0.731
BGIOSIBCE004176 Oryza indica BGIOSIBCE004176 N 0.885
Bm1_13920 Brugia malayi Bm1_13920 N 0.731
BRADI2G54220 Brachypodium distachyon BRADI2G54220 N 0.885
AFUA_5G13930 Aspergillus fumigatus CADAFUAG00006431 N 0.731
ANIA_06922 Aspergillus nidulans CADANIAG00007728 N 0.731
NFIA_073040 Neosartorya fischeri CADNFIAG00007899 N 0.731
cassava28857.valid.m1 Manihot esculenta cassava28857.valid.m1 N 1.000
cassava28858.valid.m1 Manihot esculenta cassava28858.valid.m1 N 1.000
cassava3130.m1 Manihot esculenta cassava3130.m1 N 1.000
CBG00292 Caenorhabditis briggsae CBG00292 N 0.731
CBN03898 Caenorhabditis brenneri CBN03898 N 0.731
CBN11546 Caenorhabditis brenneri CBN11546 N 0.731
chr5.LjT08O17.30.nd Lotus japonicus chr5.LjT08O17.30.nd N 0.962
CJA17052 Caenorhabditis japonica CJA17052 N 0.731
CLUG_02796 Candida lusitaniae CLUG_02796 N 0.731
CPAG_03559 Candida parapsilosis CPAG_03559 N 0.731
CRE20408 Caenorhabditis remanei CRE20408 N 0.731
CTRG_02162 Candida tropicalis CTRG_02162 N 0.769
DEHA0A09449g Debaryomyces hansenii DEHA0A09449g N 0.769
DGIL_AUG5s16g7t1 Acyrtosiphon pisum DGIL_AUG5s16g7t1 N 0.808
EFA82915.1 Polysphondylium pallidum EFA82915.1 N 0.769
ZC3H15 Anolis carolinensis ENSACAG00000001916 N 0.769
ZC3HF_BOVIN Bos taurus ENSBTAG00000021762 N 0.731
ZC3H15 Canis familiaris ENSCAFG00000014494 N 0.731
ZC3H15 Choloepus hoffmanni ENSCHOG00000011958 N 0.731
ZC3H15 Callithrix jacchus ENSCJAG00000005931 N 0.731
ENSCPOG00000012965 Cavia porcellus ENSCPOG00000012965 N 0.731
zc3h15 Danio rerio ENSDARG00000015889 N 0.769
Zc3h15 Dipodomys ordii ENSDORG00000011664 N 0.731
LOC100068634 Equus caballus ENSECAG00000017149 N 0.731
ENSETEG00000015556 Echinops telfairi ENSETEG00000015556 N 0.731
ZC3H15 Felis catus ENSFCAG00000008213 N 0.731
ZC3H15 Homo sapiens ENSG00000065548 N 0.731
ZC3H15 Gasterosteus aculeatus ENSGACG00000011648 N 0.769
ZC3HF_CHICK Gallus gallus ENSGALG00000002670 N 0.731
ZC3H15 Gorilla gorilla ENSGGOG00000000073 N 0.731
ENSLAFG00000001563 Loxodonta africana ENSLAFG00000001563 N 0.731
ZC3H15 Meleagris gallopavo ENSMGAG00000004447 N 0.731
ZC3H15 Microcebus murinus ENSMICG00000014245 N 0.731
ZC3H15 Myotis lucifugus ENSMLUG00000007741 N 0.731
ZC3H15 Macaca mulatta ENSMMUG00000017248 N 0.731
ITGAV Monodelphis domestica ENSMODG00000010653 N 0.731
Zc3h15 Mus musculus ENSMUSG00000027091 N 0.731
ZC3H15 Ornithorhynchus anatinus ENSOANG00000015742 N 0.731
ENSOCUG00000011903 Oryctolagus cuniculus ENSOCUG00000011903 N 0.731
ZC3H15 Otolemur garnettii ENSOGAG00000002182 N 0.731
ENSOPRG00000015790 Ochotona princeps ENSOPRG00000015790 N 0.731
ZC3H15 Oryzias latipes ENSORLG00000018606 N 0.769
ZC3H15 Procavia capensis ENSPCAG00000008499 N 0.731
ENSPPYG00000013004 Pongo pygmaeus ENSPPYG00000013004 N 0.731
ZC3H15 Pan troglodytes ENSPTRG00000012717 N 0.731
ZC3H15 Pteropus vampyrus ENSPVAG00000004828 N 0.731
Zc3h15 Rattus norvegicus ENSRNOG00000005256 N 0.731
ZC3H15 Sorex araneus ENSSARG00000012071 N 0.731
ZC3H15 Sus scrofa ENSSSCG00000016026 N 0.731
ZC3H15 Spermophilus tridecemlineatus ENSSTOG00000006873 N 0.731
ZC3H15 Tupaia belangeri ENSTBEG00000015530 N 0.731
ZC3H15 Taeniopygia guttata ENSTGUG00000011131 N 0.731
ZC3H15 Tetraodon nigroviridis ENSTNIG00000009860 N 0.808
ZC3H15 Takifugu rubripes ENSTRUG00000004988 N 0.769
ZC3H15 Tarsius syrichta ENSTSYG00000011019 N 0.731
ZC3H15 Tursiops truncatus ENSTTRG00000012425 N 0.731
ZC3H15 Vicugna pacos ENSVPAG00000006980 N 0.731
zc3h15 Xenopus tropicalis ENSXETG00000013336 N 0.769
estExt_fgenesh1_pm.C_chr_90145 Mycosphaerella graminicola estExt_fgenesh1_pm.C_chr_90145 N 0.769
estExt_Genewise1Plus.C_sca_2280007 Lottia gigantea estExt_Genewise1Plus.C_sca_2280007 N 0.731
e_gw.53.202.1 Nematostella vectensis e_gw.53.202.1 N 0.731
e_gw1.3.744.1 Selaginella moellendorfii e_gw1.3.744.1 N 0.769
F27D4.4 Caenorhabditis elegans F27D4.4 N 0.731
XM_002883888.1 Arabidopsis lyrata fgenesh2_kg.3__3143__AT2G20280.1 N 0.885
fgeneshTA2_pg.C_scaffold_15000146 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_15000146 N 0.731
Glyma03g33420.1 Glycine max Glyma03g33420.1 N 0.923
Glyma10g05550.1 Glycine max Glyma10g05550.1 N 0.962
Glyma19g36150.1 Glycine max Glyma19g36150.1 N 0.923
GRMZM2G032258 Zea mays GRMZM2G032258 N 0.885
GSVIVG00016357001 Vitis vinifera GSVIVG00016357001 N 1.000
gw1.233.15.1 Physcomitrella patens gw1.233.15.1 N 0.808
LOAG_00784 Loa loa LOAG_00784 N 0.731
LOC_Os01g61830 Oryza sativa LOC_Os01g61830 N 0.885
MDP0000161236 Malus x domestica MDP0000161236 N 0.923
Minc08580 Meloidogyne incognita Minc08580 N 0.731
nasonia_NCBI_hmm1144383 Nasonia vitripennis nasonia_NCBI_hmm1144383 N 0.731
PASA_GEN_1200032 Daphnia pulex PASA_GEN_1200032 N 0.731
PDK_20s1366191g001 Phoenix dactylifera PDK_20s1366191g001 N 0.885
PGUG_02031 Candida guilliermondii PGUG_02031 N 0.769
PHUM521160 Pediculus humanus PHUM521160 N 0.769
PK12342.1 Cannabis sativa PK12342.1 N 0.923
POPTR_0006s13510 Populus trichocarpa POPTR_0006s13510 N 0.962
B9HM02_POPTR Populus trichocarpa POPTR_0008s04540 N 0.923
B9MT73_POPTR Populus trichocarpa POPTR_0308s00200 N 0.962
ppa007639m Prunus persica ppa007639m N 0.923
ppa007903m Prunus persica ppa007903m N 0.962
Q6DD06 Xenopus laevis Q6DD06 N 0.731
SB03G039020 Sorghum bicolor Sb03g039020 N 0.846
SS1G_13466 Sclerotinia sclerotiorum SS1G_13466 N 0.731
WUBG_13399 Wuchereria bancrofti WUBG_13399 N 0.731