CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CJA23880
(
Caenorhabditis japonica
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
CJA23880
T09774_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CJA23880
CCHC ZF
181
198
DQCFRCGGVGHVVRQCTS
Links
Other
CCHC ZF
family RBPs
Other
Caenorhabditis japonica
RBPs
45 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CJA00525
Caenorhabditis japonica
CJA00525
N
0.722
CJA02670
Caenorhabditis japonica
CJA02670
N
0.722
CJA04336
Caenorhabditis japonica
CJA04336
N
0.722
CJA05078
Caenorhabditis japonica
CJA05078
N
0.722
CJA10177
Caenorhabditis japonica
CJA10177
N
0.722
CJA11030
Caenorhabditis japonica
CJA11030
N
0.722
CJA13138
Caenorhabditis japonica
CJA13138
N
0.889
CJA13217
Caenorhabditis japonica
CJA13217
N
0.722
CJA15447
Caenorhabditis japonica
CJA15447
N
0.778
CJA15515
Caenorhabditis japonica
CJA15515
N
0.722
CJA18092
Caenorhabditis japonica
CJA18092
N
0.889
CJA21290
Caenorhabditis japonica
CJA21290
N
0.889
CJA23650
Caenorhabditis japonica
CJA23650
N
0.722
CJA26146
Caenorhabditis japonica
CJA26146
N
0.778
CJA27243
Caenorhabditis japonica
CJA27243
N
0.722
CJA28002
Caenorhabditis japonica
CJA28002
N
0.722
CJA28132
Caenorhabditis japonica
CJA28132
N
0.889
CJA29053
Caenorhabditis japonica
CJA29053
N
0.833
CRE09308
Caenorhabditis remanei
CRE09308
N
0.000
CRE13684
Caenorhabditis remanei
CRE13684
N
0.000