CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CJA29053
(
Caenorhabditis japonica
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
CJA29053
T09801_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CJA29053
CCHC ZF
207
224
NKCFRCGGVGHMVRQCTS
Links
Other
CCHC ZF
family RBPs
Other
Caenorhabditis japonica
RBPs
58 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CJA28132
Caenorhabditis japonica
CJA28132
N
0.944
CJA24410
Caenorhabditis japonica
CJA24410
N
0.889
CJA03777
Caenorhabditis japonica
CJA03777
N
0.889
CJA25140
Caenorhabditis japonica
CJA25140
N
0.889
CJA23492
Caenorhabditis japonica
CJA23492
N
0.889
CJA05814
Caenorhabditis japonica
CJA05814
N
0.889
CJA23027
Caenorhabditis japonica
CJA23027
N
0.889
CJA13138
Caenorhabditis japonica
CJA13138
N
0.889
CJA13245
Caenorhabditis japonica
CJA13245
N
0.889
CJA24356
Caenorhabditis japonica
CJA24356
N
0.889
CJA02546
Caenorhabditis japonica
CJA02546
N
0.889
CJA26146
Caenorhabditis japonica
CJA26146
N
0.889
CJA22105
Caenorhabditis japonica
CJA22105
N
0.889
CJA19647
Caenorhabditis japonica
CJA19647
N
0.889
CJA21076
Caenorhabditis japonica
CJA21076
N
0.889
CJA21290
Caenorhabditis japonica
CJA21290
N
0.889
CJA18651
Caenorhabditis japonica
CJA18651
N
0.889
CJA27741
Caenorhabditis japonica
CJA27741
N
0.889
CJA17448
Caenorhabditis japonica
CJA17448
N
0.889
CJA00142
Caenorhabditis japonica
CJA00142
N
0.889
CJA18092
Caenorhabditis japonica
CJA18092
N
0.889
CJA23793
Caenorhabditis japonica
CJA23793
N
0.833
CJA23650
Caenorhabditis japonica
CJA23650
N
0.833
CJA13676
Caenorhabditis japonica
CJA13676
N
0.833
CJA12763
Caenorhabditis japonica
CJA12763
N
0.833
CJA17240
Caenorhabditis japonica
CJA17240
N
0.833
CJA21786
Caenorhabditis japonica
CJA21786
N
0.833
CJA07934
Caenorhabditis japonica
CJA07934
N
0.833
CJA11030
Caenorhabditis japonica
CJA11030
N
0.833
CJA27243
Caenorhabditis japonica
CJA27243
N
0.833
CJA02670
Caenorhabditis japonica
CJA02670
N
0.833
CJA05078
Caenorhabditis japonica
CJA05078
N
0.833
CJA23880
Caenorhabditis japonica
CJA23880
N
0.833
CJA10256
Caenorhabditis japonica
CJA10256
N
0.833
CJA10177
Caenorhabditis japonica
CJA10177
N
0.833
CRE09308
Caenorhabditis remanei
CRE09308
N
0.778
CRE06628
Caenorhabditis remanei
CRE06628
N
0.778
CRE03331
Caenorhabditis remanei
CRE03331
N
0.778
CRE13684
Caenorhabditis remanei
CRE13684
N
0.778
CJA26989
Caenorhabditis japonica
CJA26989
N
0.778
CJA15447
Caenorhabditis japonica
CJA15447
N
0.778
CBG08763
Caenorhabditis briggsae
CBG08763
N
0.778
CRE29150
Caenorhabditis remanei
CRE29150
N
0.778
CJA28002
Caenorhabditis japonica
CJA28002
N
0.722
CJA12868
Caenorhabditis japonica
CJA12868
N
0.722
CJA00525
Caenorhabditis japonica
CJA00525
N
0.722
CJA00848
Caenorhabditis japonica
CJA00848
N
0.722
CRE30341
Caenorhabditis remanei
CRE30341
N
0.722
CRE19609
Caenorhabditis remanei
CRE19609
N
0.722
CRE11513
Caenorhabditis remanei
CRE11513
N
0.722
CJA00955
Caenorhabditis japonica
CJA00955
N
0.722
CJA02757
Caenorhabditis japonica
CJA02757
N
0.722
CRE02519
Caenorhabditis remanei
CRE02519
N
0.722
CJA13217
Caenorhabditis japonica
CJA13217
N
0.722
CJA10427
Caenorhabditis japonica
CJA10427
N
0.722
CJA09584
Caenorhabditis japonica
CJA09584
N
0.722
CJA04336
Caenorhabditis japonica
CJA04336
N
0.722
CJA15515
Caenorhabditis japonica
CJA15515
N
0.722