CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CJA15447
(
Caenorhabditis japonica
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
CJA15447
T09720_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CJA15447
CCHC ZF
301
318
LRCFRCGGVGHTSRQCTS
Links
Other
CCHC ZF
family RBPs
Other
Caenorhabditis japonica
RBPs
51 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CJA13217
Caenorhabditis japonica
CJA13217
N
0.944
CJA04336
Caenorhabditis japonica
CJA04336
N
0.944
CJA26146
Caenorhabditis japonica
CJA26146
N
0.889
CJA02670
Caenorhabditis japonica
CJA02670
N
0.833
CJA10427
Caenorhabditis japonica
CJA10427
N
0.833
CJA29053
Caenorhabditis japonica
CJA29053
N
0.778
CJA13245
Caenorhabditis japonica
CJA13245
N
0.778
CJA28132
Caenorhabditis japonica
CJA28132
N
0.778
CJA27741
Caenorhabditis japonica
CJA27741
N
0.778
CJA05078
Caenorhabditis japonica
CJA05078
N
0.778
CJA03777
Caenorhabditis japonica
CJA03777
N
0.778
CJA13138
Caenorhabditis japonica
CJA13138
N
0.778
CJA10177
Caenorhabditis japonica
CJA10177
N
0.778
CJA00142
Caenorhabditis japonica
CJA00142
N
0.778
CJA05814
Caenorhabditis japonica
CJA05814
N
0.778
CJA11030
Caenorhabditis japonica
CJA11030
N
0.778
CJA12763
Caenorhabditis japonica
CJA12763
N
0.778
CJA02546
Caenorhabditis japonica
CJA02546
N
0.778
CJA27243
Caenorhabditis japonica
CJA27243
N
0.778
CJA21076
Caenorhabditis japonica
CJA21076
N
0.778
CJA21290
Caenorhabditis japonica
CJA21290
N
0.778
CJA21786
Caenorhabditis japonica
CJA21786
N
0.778
CJA19647
Caenorhabditis japonica
CJA19647
N
0.778
CJA18651
Caenorhabditis japonica
CJA18651
N
0.778
CJA17448
Caenorhabditis japonica
CJA17448
N
0.778
CJA18092
Caenorhabditis japonica
CJA18092
N
0.778
CJA23027
Caenorhabditis japonica
CJA23027
N
0.778
CJA22105
Caenorhabditis japonica
CJA22105
N
0.778
CJA24356
Caenorhabditis japonica
CJA24356
N
0.778
CJA23793
Caenorhabditis japonica
CJA23793
N
0.778
CJA24410
Caenorhabditis japonica
CJA24410
N
0.778
CJA23650
Caenorhabditis japonica
CJA23650
N
0.778
CJA25140
Caenorhabditis japonica
CJA25140
N
0.778
CJA23492
Caenorhabditis japonica
CJA23492
N
0.778
CJA23880
Caenorhabditis japonica
CJA23880
N
0.778
CJA05850
Caenorhabditis japonica
CJA05850
N
0.722
CJA10256
Caenorhabditis japonica
CJA10256
N
0.722
CJA07934
Caenorhabditis japonica
CJA07934
N
0.722
CJA13676
Caenorhabditis japonica
CJA13676
N
0.722
CRE09308
Caenorhabditis remanei
CRE09308
N
0.722
CJA17240
Caenorhabditis japonica
CJA17240
N
0.722
CRE06628
Caenorhabditis remanei
CRE06628
N
0.722
CRE03331
Caenorhabditis remanei
CRE03331
N
0.722
CJA26989
Caenorhabditis japonica
CJA26989
N
0.722
CRE13684
Caenorhabditis remanei
CRE13684
N
0.722
CRE19609
Caenorhabditis remanei
CRE19609
N
0.722
CJA00525
Caenorhabditis japonica
CJA00525
N
0.722
CBG08763
Caenorhabditis briggsae
CBG08763
N
0.722
CRE30341
Caenorhabditis remanei
CRE30341
N
0.722
CRE29150
Caenorhabditis remanei
CRE29150
N
0.722
CJA00848
Caenorhabditis japonica
CJA00848
N
0.722