CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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LOC_Os07g23220
(
Oryza sativa
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
LOC_Os07g23220
T11811_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LOC_Os07g23220.1
CCHC ZF
155
172
LRCFECGEKGHFASKCPS
Links
Other
CCHC ZF
family RBPs
Other
Oryza sativa
RBPs
34 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AB04099.1
Alternaria brassicicola
AB04099.1
N
0.000
BC1G_07392
Botrytis cinerea
BC1G_07392
N
0.000
BDBG_03134
Blastomyces dermatitidis
BDBG_03134
N
0.000
ACLA_038770
Aspergillus clavatus
CADACLAG00003525
N
0.000
AFLA_031810
Aspergillus flavus
CADAFLAG00002556
N
0.000
AFUA_3G10840
Aspergillus fumigatus
CADAFUAG00005564
N
0.000
An02g06570
Aspergillus niger
CADANGAG00002175
N
0.000
ANIA_10615
Aspergillus nidulans
CADANIAG00005496
N
0.000
NFIA_066410
Neosartorya fischeri
CADNFIAG00006460
N
0.000
CHGG_07335
Chaetomium globosum
CHGG_07335
N
0.000
CIMG_03768
Coccidioides immitis
CIMG_03768
N
0.000
CPSG_03514
Coccidioides posadasii
CPSG_03514
N
0.000
EAT80773.2
Phaeosphaeria nodorum
EAT80773.2
N
0.000
estExt_fgenesh1_pm.C_10341
Neurospora tetrasperma
estExt_fgenesh1_pm.C_10341
N
0.000
estExt_Genewise1.C_12313
Neurospora discreta
estExt_Genewise1.C_12313
N
0.000
estExt_Genewise1.C_12889
Cryphonectria parasitica
estExt_Genewise1.C_12889
N
0.000
estExt_Genewise1Plus.C_22270
Thielavia terrestris
estExt_Genewise1Plus.C_22270
N
0.000
estExt_Genewise1Plus.C_chr_50382
Mycosphaerella graminicola
estExt_Genewise1Plus.C_chr_50382
N
0.000
e_gw1.6.74.1
Phycomyces blakesleeanus
e_gw1.6.74.1
N
0.000
FGSG_02080
Fusarium graminearum
FGSG_02080
N
0.000
FVEG_07538
Fusarium verticillioides
FVEG_07538
N
0.000
GLRG_01222
Colletotrichum graminicola
GLRG_01222
N
0.000
GSTUMT00005703001
Tuber melanosporum
GSTUMT00005703001
N
0.000
MCYG_00821
Microsporum canis
MCYG_00821
N
0.000
MGG_06748
Magnaporthe oryzae
MGG_06748
N
0.000
MGYG_01149
Microsporum gypseum
MGYG_01149
N
0.000
NCU04110
Neurospora crassa
NCU04110
N
0.000
PABG_02328
Paracoccidioides brasiliensis
PABG_02328
N
0.000
Pa_2_3850
Podospora anserina
Pa_2_3850
N
0.000
Pc18g00800
Penicillium chrysogenum
Pc18g00800
N
0.000
PMAA_023720
Penicillium marneffei
PMAA_023720
N
0.000
PredSwiss_EST660.1
Pneumocystis carinii
PredSwiss_EST660.1
N
0.000
SJAG_00249
Schizosaccharomyces japonicus
SJAG_00249
N
0.000
SNOG_11729
Stagonospora nodorum
SNOG_11729
N
0.000
SOCG_03845
Schizosaccharomyces octosporus
SOCG_03845
N
0.000
bpb1
Schizosaccharomyces pombe
SPCC962.06c
N
0.000
SPOG_03392
Schizosaccharomyces cryophilus
SPOG_03392
N
0.000
SS1G_07196
Sclerotinia sclerotiorum
SS1G_07196
N
0.000
TEQG_01541
Trichophyton equinum
TEQG_01541
N
0.000
TERG_00369
Trichophyton rubrum
TERG_00369
N
0.000
TESG_02440
Trichophyton tonsurans
TESG_02440
N
0.000
VDAG_04652
Verticillium dahliae
VDAG_04652
N
0.000
VDBG_09415
Verticillium albo atrum
VDBG_09415
N
0.000