cassava12877.valid.m1 (Manihot esculenta)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 cassava12877.valid.m1 T13357_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava12877.valid.m1 CCHC ZF 766 783

Links

Other CCHC ZF family RBPs
Other Manihot esculenta RBPs

25 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30128.m009003 Ricinus communis 30128.m009003 N 0.889
emb1138 Arabidopsis thaliana AT5G26742-TAIR-G N 0.722
BGIOSIBCE013536 Oryza indica BGIOSIBCE013536 N 0.889
BRADI1G03180 Brachypodium distachyon BRADI1G03180 N 0.833
Cucsa.051030 Cucumis sativus Cucsa.051030 N 0.778
XM_002874266.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6002106 N 0.722
Glyma03g38550.1 Glycine max Glyma03g38550.1 N 0.833
Glyma10g28100.1 Glycine max Glyma10g28100.1 N 0.778
Glyma19g41150.1 Glycine max Glyma19g41150.1 N 0.889
Glyma20g22120.1 Glycine max Glyma20g22120.1 N 0.833
GRMZM2G163072 Zea mays GRMZM2G163072 N 0.833
GRMZM2G415491 Zea mays GRMZM2G415491 N 0.889
GSVIVG00031360001 Vitis vinifera GSVIVG00031360001 N 0.778
LjB06P23.40.nc Lotus japonicus LjB06P23.40.nc N 0.833
LOC_Os03g61220 Oryza sativa LOC_Os03g61220 N 0.889
LOC_Os08g14290 Oryza sativa LOC_Os08g14290 N 0.722
Medtr1g103590 Medicago truncatula Medtr1g103590 N 0.778
Medtr7g134530 Medicago truncatula Medtr7g134530 N 0.778
mgf008200m Mimulus guttatus mgf008200m N 0.833
mgf012653m Mimulus guttatus mgf012653m N 0.778
PK16552.1 Cannabis sativa PK16552.1 N 0.778
B9N3Y9_POPTR Populus trichocarpa POPTR_0005s00200 N 0.833
B9N3Z3_POPTR Populus trichocarpa POPTR_0005s00240 N 0.833
ppa001778m Prunus persica ppa001778m N 0.889
Sb01g002660 Sorghum bicolor Sb01g002660 N 0.889