fgenesh2_pg.scaffold_54000122 (Branchiostoma floridae)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 fgenesh2_pg.scaffold_54000122 T14240_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_pg.scaffold_54000122 CCHC ZF 388 405

Links

Other CCHC ZF family RBPs
Other Branchiostoma floridae RBPs

78 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AB02963.1 Alternaria brassicicola AB02963.1 N 0.000
BC1G_05706 Botrytis cinerea BC1G_05706 N 0.000
ACLA_036560 Aspergillus clavatus CADACLAG00003885 N 0.000
AFLA_086540 Aspergillus flavus CADAFLAG00001433 N 0.000
AO090005001419 Aspergillus oryzae CADAORAG00003299 N 0.000
CHGG_02784 Chaetomium globosum CHGG_02784 N 0.000
CIMG_07653 Coccidioides immitis CIMG_07653 N 0.000
CPSG_09452 Coccidioides posadasii CPSG_09452 N 0.000
estExt_fgenesh1_kg.C_chr_50164 Mycosphaerella graminicola estExt_fgenesh1_kg.C_chr_50164 N 0.000
estExt_fgenesh5_pg.C_40456 Trichoderma reesei estExt_fgenesh5_pg.C_40456 N 0.000
estExt_Genewise1Plus.C_12858 Trichoderma atroviride estExt_Genewise1Plus.C_12858 N 0.000
estExt_Genewise1Plus.C_31070 Cochliobolus heterostrophus C5 estExt_Genewise1Plus.C_31070 N 0.000
estExt_Genewise1Plus.C_70764 Mycosphaerella fijiensis estExt_Genewise1Plus.C_70764 N 0.000
fgenesh1_pg.sca_1_chr1_3_0000562 Nectria haematococca fgenesh1_pg.sca_1_chr1_3_0000562 N 0.000
FGSG_00442 Fusarium graminearum FGSG_00442 N 0.000
FVEG_00902 Fusarium verticillioides FVEG_00902 N 0.000
genemark.1698_g Thielavia terrestris genemark.1698_g N 0.000
GLRG_03991 Colletotrichum graminicola GLRG_03991 N 0.000
GSTUMT00008723001 Tuber melanosporum GSTUMT00008723001 N 0.000
gw1.2.3269.1 Myceliophthora thermophila gw1.2.3269.1 N 0.000
gw1.6.738.1 Cryphonectria parasitica gw1.6.738.1 N 0.000
gw1.9.437.1 Trichoderma virens gw1.9.437.1 N 0.000
MGG_04816 Magnaporthe oryzae MGG_04816 N 0.000
NCU02736 Neurospora crassa NCU02736 N 0.000
Pa_1_13615 Podospora anserina Pa_1_13615 N 0.000
PTRG_07976 Pyrenophora tritici repentis PTRG_07976 N 0.000
SNOG_04431 Stagonospora nodorum SNOG_04431 N 0.000
SS1G_02886 Sclerotinia sclerotiorum SS1G_02886 N 0.000
VDAG_03252 Verticillium dahliae VDAG_03252 N 0.000