PDK_20s1898261g001 (Phoenix dactylifera)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 PDK_20s1898261g001 T16197_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
PDK_20s1898261g001 CCHC ZF 200 217

Links

Other CCHC ZF family RBPs
Other Phoenix dactylifera RBPs

39 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30128.m008637 Ricinus communis 30128.m008637 N 0.722
30170.m014167 Ricinus communis 30170.m014167 N 0.722
AIN1 Arabidopsis thaliana AT1G54490-TAIR-G N 0.722
XRN2 Arabidopsis thaliana AT5G42540-TAIR-G N 0.722
BGIOSIBCE013267 Oryza indica BGIOSIBCE013267 N 0.722
BRADI1G05660 Brachypodium distachyon BRADI1G05660 N 0.722
BRADI2G56440 Brachypodium distachyon BRADI2G56440 N 0.722
cassava11141.m1 Manihot esculenta cassava11141.m1 N 0.722
cassava11142.m1 Manihot esculenta cassava11142.m1 N 0.722
cassava11143.m1 Manihot esculenta cassava11143.m1 N 0.722
cassava11144.m1 Manihot esculenta cassava11144.m1 N 0.722
cassava11145.m1 Manihot esculenta cassava11145.m1 N 0.722
cassava11146.m1 Manihot esculenta cassava11146.m1 N 0.722
cassava11147.m1 Manihot esculenta cassava11147.m1 N 0.722
cassava11148.m1 Manihot esculenta cassava11148.m1 N 0.722
cassava11149.m1 Manihot esculenta cassava11149.m1 N 0.722
cassava11150.m1 Manihot esculenta cassava11150.m1 N 0.722
cassava6287.valid.m1 Manihot esculenta cassava6287.valid.m1 N 0.722
cassava6288.valid.m1 Manihot esculenta cassava6288.valid.m1 N 0.722
cassava6289.valid.m1 Manihot esculenta cassava6289.valid.m1 N 0.722
chr5.LjT15D05.170.nd Lotus japonicus chr5.LjT15D05.170.nd N 0.722
Cucsa.033870 Cucumis sativus Cucsa.033870 N 0.833
Glyma03g40500.1 Glycine max Glyma03g40500.1 N 0.722
Glyma10g30150.1 Glycine max Glyma10g30150.1 N 0.778
Glyma19g43160.1 Glycine max Glyma19g43160.1 N 0.722
Glyma20g37260.1 Glycine max Glyma20g37260.1 N 0.778
GRMZM2G099630 Zea mays GRMZM2G099630 N 0.722
LOC_Os03g58060 Oryza sativa LOC_Os03g58060 N 0.722
MDP0000127462 Malus x domestica MDP0000127462 N 0.722
MDP0000214139 Malus x domestica MDP0000214139 N 0.722
MDP0000274866 Malus x domestica MDP0000274866 N 0.722
Medtr1g096550 Medicago truncatula Medtr1g096550 N 0.722
mgf012893m Mimulus guttatus mgf012893m N 0.722
PDK_20s1387941g001 Phoenix dactylifera PDK_20s1387941g001 N 0.722
PDK_20s1528451g001 Phoenix dactylifera PDK_20s1528451g001 N 0.833
B9GQW8_POPTR Populus trichocarpa POPTR_0002s02570 N 0.722
ppa000881m Prunus persica ppa000881m N 0.722
SB01G005340 Sorghum bicolor Sb01g005340 N 0.722
XM_002865463.1 Arabidopsis lyrata scaffold_800897.1 N 0.722