gw1.1047.6.1 (Capitella teleta)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 gw1.1047.6.1 T17315_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YB-1
M111_0.6 		Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		0.746
YB-1
M081_0.6 		Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		0.746
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
gw1.1047.6.1 CSD 3 73

Links

Other CSD family RBPs
Other Capitella teleta RBPs

111 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAA49715 Xenopus laevis AAA49715 I 0.722
AAEL001375 Aedes aegypti AAEL001375 I 0.732
AAH41191 Xenopus laevis AAH41191 I 0.722
AAH42217 Xenopus laevis AAH42217 I 0.722
AAI06324 Xenopus laevis AAI06324 I 0.722
AAI30161 Xenopus laevis AAI30161 I 0.722
AGAP006108 Anopheles gambiae AGAP006108 I 0.732
amel4_ncbi_hmm3751 Apis mellifera amel4_ncbi_hmm3751 I 0.732
amel4_ncbi_hmm3751 Tribolium castaneum amel4_ncbi_hmm3751 I 0.732
amel4_ncbi_hmm4087 Apis mellifera amel4_ncbi_hmm4087 I 0.732
CAA42778 Xenopus laevis CAA42778 I 0.722
DGIL_AUG5s15730g8t2 Acyrtosiphon pisum DGIL_AUG5s15730g8t2 I 0.704
A5D7Q4_BOVIN Bos taurus ENSBTAG00000009663 I 0.722
YBOX1_BOVIN Bos taurus ENSBTAG00000017368 I 0.722
ENSCAFG00000002541 Canis familiaris ENSCAFG00000002541 I 0.722
XP_856029.1 Canis familiaris ENSCAFG00000010117 I 0.708
Q9N1Q2_CANFA Canis familiaris ENSCAFG00000013401 I 0.722
CSDA Choloepus hoffmanni ENSCHOG00000011988 I 0.722
LOC100401646 Callithrix jacchus ENSCJAG00000003155 I 0.722
ENSCJAG00000010572 Callithrix jacchus ENSCJAG00000010572 I 0.708
LOC100396927 Callithrix jacchus ENSCJAG00000021660 I 0.722
ENSCPOG00000010888 Cavia porcellus ENSCPOG00000010888 I 0.722
CSDA Cavia porcellus ENSCPOG00000011329 I 0.722
ybx1 Danio rerio ENSDARG00000004757 I 0.722
Csda Dipodomys ordii ENSDORG00000009103 I 0.722
ENSECAG00000008961 Equus caballus ENSECAG00000008961 I 0.722
ENSECAG00000011356 Equus caballus ENSECAG00000011356 I 0.708
LOC100065107 Equus caballus ENSECAG00000013777 I 0.722
LOC100067336 Equus caballus ENSECAG00000023592 I 0.722
ENSEEUG00000005657 Erinaceus europaeus ENSEEUG00000005657 I 0.722
CSDA Erinaceus europaeus ENSEEUG00000010415 I 0.722
CSDA Echinops telfairi ENSETEG00000002557 I 0.722
CSDA Homo sapiens ENSG00000060138 I 0.722
YB-1 Homo sapiens ENSG00000065978 D 0.722
YBX1 Gasterosteus aculeatus ENSGACG00000006447 I 0.722
YBOX1_CHICK Gallus gallus ENSGALG00000004848 I 0.722
ENSGALG00000018512 Gallus gallus ENSGALG00000018512 I 0.722
CSDA Gorilla gorilla ENSGGOG00000001352 I 0.722
YBX1 Loxodonta africana ENSLAFG00000007597 I 0.722
CSDA Loxodonta africana ENSLAFG00000017247 I 0.722
YBX1 Meleagris gallopavo ENSMGAG00000006879 I 0.722
YBX1 Microcebus murinus ENSMICG00000014984 I 0.722
CSDA Myotis lucifugus ENSMLUG00000007476 I 0.722
ENSMMUG00000013136 Macaca mulatta ENSMMUG00000013136 I 0.722
CSDA Macaca mulatta ENSMMUG00000022469 I 0.722
ENSMMUG00000032563 Macaca mulatta ENSMMUG00000032563 I 0.708
YBX1 Monodelphis domestica ENSMODG00000017214 I 0.722
CSDA Monodelphis domestica ENSMODG00000018248 I 0.722
ENSMODG00000022963 Monodelphis domestica ENSMODG00000022963 I 0.736
Ybx1 Mus musculus ENSMUSG00000028639 I 0.722
Csda Mus musculus ENSMUSG00000030189 I 0.722
ENSOANG00000001663 Ornithorhynchus anatinus ENSOANG00000001663 I 0.722
YBX1 Ornithorhynchus anatinus ENSOANG00000011725 I 0.722
Q8AXS2_ORYLA Oryzias latipes ENSORLG00000004225 I 0.722
ENSPPYG00000004279 Pongo pygmaeus ENSPPYG00000004279 I 0.722
XR_021659.1 Pan troglodytes ENSPTRG00000000615 I 0.722
CSDA Pan troglodytes ENSPTRG00000004681 I 0.722
YBX1 Pteropus vampyrus ENSPVAG00000005504 I 0.722
CSDA Pteropus vampyrus ENSPVAG00000006740 I 0.722
Csda Rattus norvegicus ENSRNOG00000005480 I 0.722
ENSRNOG00000006596 Rattus norvegicus ENSRNOG00000006596 I 0.708
ENSRNOG00000023786 Rattus norvegicus ENSRNOG00000023786 I 0.708
YBOX1_RAT Rattus norvegicus ENSRNOG00000030807 I 0.722
ENSRNOG00000043268 Rattus norvegicus ENSRNOG00000043268 I 0.704
CSDA Sus scrofa ENSSSCG00000000633 I 0.722
ENSSSCG00000008860 Sus scrofa ENSSSCG00000008860 I 0.708
ENSSTOG00000000116 Spermophilus tridecemlineatus ENSSTOG00000000116 I 0.722
CSDA Tupaia belangeri ENSTBEG00000012570 I 0.722
CSDA Taeniopygia guttata ENSTGUG00000012047 I 0.722
YBX1 Taeniopygia guttata ENSTGUG00000017262 I 0.722
YBX1 Tetraodon nigroviridis ENSTNIG00000011989 I 0.722
Q90WH2_FUGRU Takifugu rubripes ENSTRUG00000015333 I 0.722
YBX1 Vicugna pacos ENSVPAG00000000068 I 0.722
ybx1 Xenopus tropicalis ENSXETG00000013436 I 0.722
csda Xenopus tropicalis ENSXETG00000016239 I 0.722
estExt_Genewise1Plus.C_1630040 Capitella teleta estExt_Genewise1Plus.C_1630040 I 0.817
e_gw.440.24.1 Branchiostoma floridae e_gw.440.24.1 I 0.736
e_gw1.21.99.1 Capitella teleta e_gw1.21.99.1 I 0.887
e_gw1.343.39.1 Capitella teleta e_gw1.343.39.1 I 0.817
e_gw1.9027.2.1 Capitella teleta e_gw1.9027.2.1 I 0.873
yps Drosophila melanogaster FBgn0022959 I 0.718
GF10852 Drosophila ananassae FBgn0087892 I 0.718
GH16919 Drosophila grimshawi FBgn0124390 I 0.718
GI13673 Drosophila mojavensis FBgn0136428 I 0.718
GL15684 Drosophila persimilis FBgn0153288 I 0.718
GM24682 Drosophila sechellia FBgn0179545 I 0.718
GD12750 Drosophila simulans FBgn0184477 I 0.718
GJ14010 Drosophila virilis FBgn0201228 I 0.718
GK16710 Drosophila willistoni FBgn0218712 I 0.718
GE20150 Drosophila yakuba FBgn0237472 I 0.718
GA23502-RA Drosophila pseudoobscura FBgn0244903 I 0.718
fgenesh1_pg.C_scaffold_1662000001 Capitella teleta fgenesh1_pg.C_scaffold_1662000001 N 0.761
gw1.1098.8.1 Capitella teleta gw1.1098.8.1 I 0.901
gw1.11296.2.1 Capitella teleta gw1.11296.2.1 I 0.901
gw1.342.14.1 Capitella teleta gw1.342.14.1 I 0.901
gw1.367.31.1 Capitella teleta gw1.367.31.1 I 0.887
gw1.4.101.1 Capitella teleta gw1.4.101.1 I 0.901
gw1.4124.2.1 Capitella teleta gw1.4124.2.1 I 0.761
gw1.598.14.1 Capitella teleta gw1.598.14.1 I 0.861
gw1.79.157.1 Lottia gigantea gw1.79.157.1 I 0.746
gw1.863.5.1 Capitella teleta gw1.863.5.1 I 0.761
gw1.93.56.1 Capitella teleta gw1.93.56.1 I 0.901
P21573 Xenopus laevis P21573 I 0.722
PHUM156710 Pediculus humanus PHUM156710 I 0.761
PHUM156720 Pediculus humanus PHUM156720 I 0.732
Q00436 Xenopus laevis Q00436 I 0.722
SNAPOd2T00011389001 Oikopleura dioica SNAPOd2T00011389001 I 0.746
XP_001178393.1 Strongylocentrotus purpuratus XP_001178393.1 I 0.718
XP_002154000.1 Hydra magnipapillata XP_002154000.1 I 0.718
XP_002159745.1 Hydra magnipapillata XP_002159745.1 I 0.718
XP_785816.1 Strongylocentrotus purpuratus XP_785816.1 I 0.718