ENSRNOG00000043268 (Rattus norvegicus)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 ENSRNOG00000043268 T17007_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YB-1
M111_0.6 		Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		0.887
YB-1
M081_0.6 		Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		0.887
ybx2-a
M260_0.6 		Xenopus laevis GCCANACCAYCGC SELEX
Cook et al.(2011)
130_11376140 		0.861
ybx2-a
M254_0.6 		Xenopus laevis KAACAUCU SELEX
Cook et al.(2011)
115_7499328 		0.861
ybx2-a
M250_0.6 		Xenopus laevis UAACAUC SELEX
Cook et al.(2011)
114_7499328 		0.861
YBX2
M082_0.6 		Homo sapiens AACAWCD RNAcompete
Ray et al.(2013)
RNCMPT00084 		0.847
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000062929 CSD 26 96
ENSRNOP00000063185 CSD 39 109

Links

Other CSD family RBPs
Other Rattus norvegicus RBPs

188 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ybx1 Rattus norvegicus ENSRNOG00000032902 I 0.917
YBX1 Loxodonta africana ENSLAFG00000007597 I 0.861
Q9N1Q2_CANFA Canis familiaris ENSCAFG00000013401 I 0.861
CSDA Loxodonta africana ENSLAFG00000017247 I 0.861
ENSGALG00000018512 Gallus gallus ENSGALG00000018512 I 0.861
YBX1 Gasterosteus aculeatus ENSGACG00000006447 I 0.861
YBOX1_CHICK Gallus gallus ENSGALG00000004848 I 0.861
YBX1 Meleagris gallopavo ENSMGAG00000006879 I 0.861
CSDA Gorilla gorilla ENSGGOG00000001352 I 0.861
YBX1 Microcebus murinus ENSMICG00000014984 I 0.861
CSDA Macaca mulatta ENSMMUG00000022469 I 0.861
ybx1 Danio rerio ENSDARG00000004757 I 0.861
YBX1 Monodelphis domestica ENSMODG00000017214 I 0.861
Csda Dipodomys ordii ENSDORG00000009103 I 0.861
CSDA Myotis lucifugus ENSMLUG00000007476 I 0.861
ENSECAG00000008961 Equus caballus ENSECAG00000008961 I 0.861
CSDA Choloepus hoffmanni ENSCHOG00000011988 I 0.861
YB-1 Homo sapiens ENSG00000065978 D 0.861
AAA49715 Xenopus laevis AAA49715 I 0.861
CSDA Echinops telfairi ENSETEG00000002557 I 0.861
A5D7Q4_BOVIN Bos taurus ENSBTAG00000009663 I 0.861
CSDA Homo sapiens ENSG00000060138 I 0.861
CSDA Erinaceus europaeus ENSEEUG00000010415 I 0.861
ENSEEUG00000005657 Erinaceus europaeus ENSEEUG00000005657 I 0.861
LOC100065107 Equus caballus ENSECAG00000013777 I 0.861
LOC100067336 Equus caballus ENSECAG00000023592 I 0.861
Q00436 Xenopus laevis Q00436 I 0.861
YBOX1_BOVIN Bos taurus ENSBTAG00000017368 I 0.861
AAI06324 Xenopus laevis AAI06324 I 0.861
AAH42217 Xenopus laevis AAH42217 I 0.861
AAH41191 Xenopus laevis AAH41191 I 0.861
AAI30161 Xenopus laevis AAI30161 I 0.861
ENSCAFG00000002541 Canis familiaris ENSCAFG00000002541 I 0.861
P21573 Xenopus laevis P21573 I 0.861
CAA42778 Xenopus laevis CAA42778 I 0.861
LOC100401646 Callithrix jacchus ENSCJAG00000003155 I 0.861
ENSMMUG00000013136 Macaca mulatta ENSMMUG00000013136 I 0.861
Csda Rattus norvegicus ENSRNOG00000005480 I 0.861
Q90WH2_FUGRU Takifugu rubripes ENSTRUG00000015333 I 0.861
ENSCPOG00000010888 Cavia porcellus ENSCPOG00000010888 I 0.861
CSDA Pteropus vampyrus ENSPVAG00000006740 I 0.861
YBX1 Pteropus vampyrus ENSPVAG00000005504 I 0.861
ENSCJAG00000010572 Callithrix jacchus ENSCJAG00000010572 I 0.861
ybx1 Xenopus tropicalis ENSXETG00000013436 I 0.861
YBX1 Tetraodon nigroviridis ENSTNIG00000011989 I 0.861
YBX1 Taeniopygia guttata ENSTGUG00000017262 I 0.861
CSDA Sus scrofa ENSSSCG00000000633 I 0.861
LOC100396927 Callithrix jacchus ENSCJAG00000021660 I 0.861
YBOX1_RAT Rattus norvegicus ENSRNOG00000030807 I 0.861
ENSSTOG00000000116 Spermophilus tridecemlineatus ENSSTOG00000000116 I 0.861
CSDA Taeniopygia guttata ENSTGUG00000012047 I 0.861
CSDA Tupaia belangeri ENSTBEG00000012570 I 0.861
CSDA Pan troglodytes ENSPTRG00000004681 I 0.861
YBX1 Vicugna pacos ENSVPAG00000000068 I 0.861
Q8AXS2_ORYLA Oryzias latipes ENSORLG00000004225 I 0.861
YBX1 Ornithorhynchus anatinus ENSOANG00000011725 I 0.861
Ybx1 Mus musculus ENSMUSG00000028639 I 0.861
Csda Mus musculus ENSMUSG00000030189 I 0.861
CSDA Cavia porcellus ENSCPOG00000011329 I 0.861
XR_021659.1 Pan troglodytes ENSPTRG00000000615 I 0.861
ENSPPYG00000004279 Pongo pygmaeus ENSPPYG00000004279 I 0.861
ENSOANG00000001663 Ornithorhynchus anatinus ENSOANG00000001663 I 0.861
P21574 Xenopus laevis P21574 I 0.847
YBX2 Tupaia belangeri ENSTBEG00000001266 I 0.847
Ybx2 Mus musculus ENSMUSG00000018554 I 0.847
YBX2 Cavia porcellus ENSCPOG00000009543 I 0.847
ENSMMUG00000032563 Macaca mulatta ENSMMUG00000032563 I 0.847
A5D7M4_BOVIN Bos taurus ENSBTAG00000009126 I 0.847
ybx2-a Xenopus laevis AAI69706 D 0.847
ENSRNOG00000023786 Rattus norvegicus ENSRNOG00000023786 I 0.847
YBX2 Sus scrofa ENSSSCG00000017938 I 0.847
AAI55915 Xenopus laevis AAI55915 I 0.847
AAA49716 Xenopus laevis AAA49716 I 0.847
ENSECAG00000011356 Equus caballus ENSECAG00000011356 I 0.847
CSDA Monodelphis domestica ENSMODG00000018248 I 0.847
YBX2 Procavia capensis ENSPCAG00000008019 I 0.847
YBX2 Loxodonta africana ENSLAFG00000014006 I 0.847
AAI69704 Xenopus laevis AAI69704 I 0.847
YBX2 Ochotona princeps ENSOPRG00000013773 I 0.847
XP_856029.1 Canis familiaris ENSCAFG00000010117 I 0.847
Ybx2 Rattus norvegicus ENSRNOG00000017117 I 0.847
LOC100072964 Equus caballus ENSECAG00000009996 I 0.847
YBX2 Canis familiaris ENSCAFG00000016128 I 0.847
LOC100403904 Callithrix jacchus ENSCJAG00000016581 I 0.833
ENSBTAG00000006133 Bos taurus ENSBTAG00000006133 I 0.833
ENSGGOG00000023581 Gorilla gorilla ENSGGOG00000023581 I 0.833
XR_022686.1 Pan troglodytes ENSPTRG00000008673 I 0.833
YBX2 Monodelphis domestica ENSMODG00000017596 I 0.833
YBX2 Sorex araneus ENSSARG00000000488 I 0.833
ENSRNOG00000006596 Rattus norvegicus ENSRNOG00000006596 I 0.833
ENSMLUG00000004747 Myotis lucifugus ENSMLUG00000004747 I 0.833
YBX2 Macaca mulatta ENSMMUG00000022712 I 0.833
YBX2 Gorilla gorilla ENSGGOG00000007399 I 0.833
YBX2 Homo sapiens ENSG00000006047 D 0.833
P45441 Xenopus laevis P45441 I 0.833
ENSMODG00000022963 Monodelphis domestica ENSMODG00000022963 I 0.833
AAI55914 Xenopus laevis AAI55914 I 0.833
AAA49924 Xenopus laevis AAA49924 I 0.833
YBX2 Myotis lucifugus ENSMLUG00000004686 I 0.831
csda Xenopus tropicalis ENSXETG00000016239 I 0.819
ENSCAFG00000000872 Canis familiaris ENSCAFG00000000872 I 0.819
ENSCJAG00000032211 Callithrix jacchus ENSCJAG00000032211 I 0.819
e_gw.440.24.1 Branchiostoma floridae e_gw.440.24.1 I 0.819
ENSCJAG00000033824 Callithrix jacchus ENSCJAG00000033824 I 0.817
estExt_Genewise1Plus.C_1630040 Capitella teleta estExt_Genewise1Plus.C_1630040 I 0.817
gw1.79.157.1 Lottia gigantea gw1.79.157.1 I 0.817
ENSCJAG00000035120 Callithrix jacchus ENSCJAG00000035120 I 0.806
ENSSSCG00000008860 Sus scrofa ENSSSCG00000008860 I 0.806
ENSEEUG00000007494 Erinaceus europaeus ENSEEUG00000007494 I 0.806
ENSMLUG00000003812 Myotis lucifugus ENSMLUG00000003812 I 0.803
ENSCAFG00000007977 Canis familiaris ENSCAFG00000007977 I 0.803
ENSCJAG00000018832 Callithrix jacchus ENSCJAG00000018832 I 0.803
Q90WH1_ORYLA Oryzias latipes ENSORLG00000006269 I 0.792
ENSGACG00000019392 Gasterosteus aculeatus ENSGACG00000019392 I 0.792
CSDA Procavia capensis ENSPCAG00000001397 I 0.792
XP_002159745.1 Hydra magnipapillata XP_002159745.1 I 0.789
ENSSSCG00000015308 Sus scrofa ENSSSCG00000015308 I 0.789
YBX1 Tursiops truncatus ENSTTRG00000001353 I 0.789
XP_002154000.1 Hydra magnipapillata XP_002154000.1 I 0.789
ENSCJAG00000031567 Callithrix jacchus ENSCJAG00000031567 I 0.789
gw1.11296.2.1 Capitella teleta gw1.11296.2.1 I 0.789
ENSTNIG00000010139 Tetraodon nigroviridis ENSTNIG00000010139 I 0.778
ENSTRUG00000011813 Takifugu rubripes ENSTRUG00000011813 I 0.778
amel4_ncbi_hmm4087 Apis mellifera amel4_ncbi_hmm4087 I 0.775
amel4_ncbi_hmm3751 Apis mellifera amel4_ncbi_hmm3751 I 0.775
amel4_ncbi_hmm3751 Tribolium castaneum amel4_ncbi_hmm3751 I 0.775
DGIL_AUG5s15730g8t2 Acyrtosiphon pisum DGIL_AUG5s15730g8t2 I 0.775
ENSCJAG00000007407 Callithrix jacchus ENSCJAG00000007407 I 0.775
ISCW005281 Ixodes scapularis ISCW005281 I 0.775
ENSCAFG00000005471 Canis familiaris ENSCAFG00000005471 I 0.767
ENSCSAVG00000003053 Ciona savignyi ENSCSAVG00000003053 I 0.764
NCBI_GNO_0300554 Daphnia pulex NCBI_GNO_0300554 I 0.761
GM24682 Drosophila sechellia FBgn0179545 I 0.761
gw1.4.101.1 Capitella teleta gw1.4.101.1 I 0.761
gw1.367.31.1 Capitella teleta gw1.367.31.1 I 0.761
BGIBMGA000526 Bombyx mori BGIBMGA000526 I 0.761
gw1.93.56.1 Capitella teleta gw1.93.56.1 I 0.761
SNAPOd2T00011389001 Oikopleura dioica SNAPOd2T00011389001 I 0.761
GD12750 Drosophila simulans FBgn0184477 I 0.761
yps Drosophila melanogaster FBgn0022959 I 0.761
e_gw1.21.99.1 Capitella teleta e_gw1.21.99.1 I 0.761
GE20150 Drosophila yakuba FBgn0237472 I 0.761
e_gw1.9027.2.1 Capitella teleta e_gw1.9027.2.1 I 0.761
PHUM156710 Pediculus humanus PHUM156710 I 0.761
Q4H2L7_CIOIN Ciona intestinalis ENSCING00000010654 I 0.750
PHUM156720 Pediculus humanus PHUM156720 I 0.746
GK16710 Drosophila willistoni FBgn0218712 I 0.746
GA23502-RA Drosophila pseudoobscura FBgn0244903 I 0.746
CSDA Otolemur garnettii ENSOGAG00000013245 I 0.746
YBX1 Ochotona princeps ENSOPRG00000008050 I 0.746
GH16919 Drosophila grimshawi FBgn0124390 I 0.746
ENSCAFG00000016520 Canis familiaris ENSCAFG00000016520 I 0.746
XM_549034.2 Canis familiaris ENSCAFG00000016523 I 0.746
YBX1 Tarsius syrichta ENSTSYG00000006915 I 0.746
ENSCJAG00000035469 Callithrix jacchus ENSCJAG00000035469 I 0.746
GF10852 Drosophila ananassae FBgn0087892 I 0.746
XP_785816.1 Strongylocentrotus purpuratus XP_785816.1 I 0.746
GI13673 Drosophila mojavensis FBgn0136428 I 0.746
GL15684 Drosophila persimilis FBgn0153288 I 0.746
GJ14010 Drosophila virilis FBgn0201228 I 0.746
XP_001178393.1 Strongylocentrotus purpuratus XP_001178393.1 I 0.746
gw1.1098.8.1 Capitella teleta gw1.1098.8.1 I 0.746
CSDA Vicugna pacos ENSVPAG00000000876 I 0.736
CSDA Microcebus murinus ENSMICG00000004602 I 0.736
AGAP006108 Anopheles gambiae AGAP006108 I 0.732
YBX2 Macropus eugenii ENSMEUG00000006947 I 0.732
AAEL001375 Aedes aegypti AAEL001375 I 0.732
ENSGGOG00000004758 Gorilla gorilla ENSGGOG00000004758 I 0.732
ENSCJAG00000018092 Callithrix jacchus ENSCJAG00000018092 I 0.732
estExt_fgeneshTA2_pg.C_60554 Trichoplax adhaerens estExt_fgeneshTA2_pg.C_60554 I 0.732
ENSSSCG00000012830 Sus scrofa ENSSSCG00000012830 I 0.732
YBX1 Sorex araneus ENSSARG00000012628 I 0.732
e_gw.71.100.1 Nematostella vectensis e_gw.71.100.1 I 0.732
Ame_R019916 Ailuropoda melanoleuca Ame_R019916 I 0.732
ENSPPYG00000001466 Pongo pygmaeus ENSPPYG00000001466 I 0.722
ENSCJAG00000031891 Callithrix jacchus ENSCJAG00000031891 I 0.722
ENSCJAG00000000083 Callithrix jacchus ENSCJAG00000000083 I 0.718
RGD1562120 Rattus norvegicus ENSRNOG00000040034 I 0.718
Ppa-cey-1 Pristionchus pacificus PPA28011 I 0.718
WUBG_03960 Wuchereria bancrofti WUBG_03960 I 0.718
Bm1_57515 Brugia malayi Bm1_57515 I 0.718
gw1.1047.6.1 Capitella teleta gw1.1047.6.1 I 0.704
gw1.342.14.1 Capitella teleta gw1.342.14.1 I 0.704
e_gw1.343.39.1 Capitella teleta e_gw1.343.39.1 I 0.704
Aqu1.220698 Amphimedon queenslandica Aqu1.220698 I 0.704
CSDA Oryctolagus cuniculus ENSOCUG00000001889 I 0.704
ENSRNOG00000011939 Rattus norvegicus ENSRNOG00000011939 I 0.704