cassava38202.valid.m1 (Manihot esculenta)
La,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF05383 (La)
PF00076 (RRM_1) 		IPR006630
IPR000504 		cassava38202.valid.m1 T23562_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava38202.valid.m1 La 188 247
cassava38202.valid.m1 RRM 278 317
cassava38202.valid.m1 RRM 321 357

Links

Other La,RRM family RBPs
Other Manihot esculenta RBPs

14 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30042.m000490 Ricinus communis 30042.m000490 N 0.863
AT2G43970 Arabidopsis thaliana AT2G43970-TAIR-G N 0.707
cassava38201.valid.m1 Manihot esculenta cassava38201.valid.m1 N 0.929
chr1.CM0105.1300.nc Lotus japonicus chr1.CM0105.1300.nc N 0.775
Cucsa.151410 Cucumis sativus Cucsa.151410 N 0.812
XM_002881897.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_4002119 N 0.707
Glyma03g42540.1 Glycine max Glyma03g42540.1 N 0.775
Glyma19g45320.1 Glycine max Glyma19g45320.1 N 0.783
GSVIVG00038251001 Vitis vinifera GSVIVG00038251001 N 0.732
MDP0000319338 Malus x domestica MDP0000319338 N 0.754
PK11097.1 Cannabis sativa PK11097.1 N 0.777
B9HGC1_POPTR Populus trichocarpa POPTR_0007s00450 N 0.870
B9IJ52_POPTR Populus trichocarpa POPTR_0017s04020 N 0.848
ppa005181m Prunus persica ppa005181m N 0.761