Glyma03g42540.1 (Glycine max)
La,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF05383 (La)
PF00076 (RRM_1) 		IPR006630
IPR000504 		Glyma03g42540.1 T23621_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Glyma03g42540.1 La 211 269
Glyma03g42540.1 RRM 300 341
Glyma03g42540.1 RRM 345 380

Links

Other La,RRM family RBPs
Other Glycine max RBPs

14 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma19g45320.1 Glycine max Glyma19g45320.1 N 0.942
chr1.CM0105.1300.nc Lotus japonicus chr1.CM0105.1300.nc N 0.928
ppa005181m Prunus persica ppa005181m N 0.833
PK11097.1 Cannabis sativa PK11097.1 N 0.813
B9HGC1_POPTR Populus trichocarpa POPTR_0007s00450 N 0.812
B9IJ52_POPTR Populus trichocarpa POPTR_0017s04020 N 0.812
Cucsa.151410 Cucumis sativus Cucsa.151410 N 0.812
GSVIVG00038251001 Vitis vinifera GSVIVG00038251001 N 0.803
cassava38201.valid.m1 Manihot esculenta cassava38201.valid.m1 N 0.794
30042.m000490 Ricinus communis 30042.m000490 N 0.791
MDP0000319338 Malus x domestica MDP0000319338 N 0.783
cassava38202.valid.m1 Manihot esculenta cassava38202.valid.m1 N 0.775
XM_002881897.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_4002119 N 0.729
AT2G43970 Arabidopsis thaliana AT2G43970-TAIR-G N 0.714