MDP0000319338 (Malus x domestica)
La,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF05383 (La)
PF00076 (RRM_1) 		IPR006630
IPR000504 		MDP0000319338 T23703_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000319338 La 160 219
MDP0000319338 RRM 250 289
MDP0000319338 RRM 301 330

Links

Other La,RRM family RBPs
Other Malus x domestica RBPs

16 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa005181m Prunus persica ppa005181m N 0.895
30042.m000490 Ricinus communis 30042.m000490 N 0.836
PK11097.1 Cannabis sativa PK11097.1 N 0.836
B9HGC1_POPTR Populus trichocarpa POPTR_0007s00450 N 0.822
B9IJ52_POPTR Populus trichocarpa POPTR_0017s04020 N 0.822
Cucsa.151410 Cucumis sativus Cucsa.151410 N 0.803
Glyma19g45320.1 Glycine max Glyma19g45320.1 N 0.803
chr1.CM0105.1300.nc Lotus japonicus chr1.CM0105.1300.nc N 0.796
Glyma03g42540.1 Glycine max Glyma03g42540.1 N 0.783
cassava38201.valid.m1 Manihot esculenta cassava38201.valid.m1 N 0.773
GSVIVG00038251001 Vitis vinifera GSVIVG00038251001 N 0.770
cassava38202.valid.m1 Manihot esculenta cassava38202.valid.m1 N 0.754
AT2G43970 Arabidopsis thaliana AT2G43970-TAIR-G N 0.731
XM_002881897.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_4002119 N 0.723
SB05G006890 Sorghum bicolor Sb05g006890 N 0.719
GRMZM2G072339 Zea mays GRMZM2G072339 N 0.704