AT2G43970 (Arabidopsis thaliana)
La,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF05383 (La)
PF00076 (RRM_1) 		IPR006630
IPR000504 		AT2G43970-TAIR-G T23304_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
AT2G43970.1-P La 197 256
AT2G43970.1-P RRM 287 326
AT2G43970.1-P RRM 335 368
AT2G43970.2-P La 197 256

Links

Other La,RRM family RBPs
Other Arabidopsis thaliana RBPs

13 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002881897.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_4002119 N 0.920
B9IJ52_POPTR Populus trichocarpa POPTR_0017s04020 N 0.759
PK11097.1 Cannabis sativa PK11097.1 N 0.750
ppa005181m Prunus persica ppa005181m N 0.748
B9HGC1_POPTR Populus trichocarpa POPTR_0007s00450 N 0.745
Glyma19g45320.1 Glycine max Glyma19g45320.1 N 0.741
chr1.CM0105.1300.nc Lotus japonicus chr1.CM0105.1300.nc N 0.734
MDP0000319338 Malus x domestica MDP0000319338 N 0.731
Cucsa.151410 Cucumis sativus Cucsa.151410 N 0.727
30042.m000490 Ricinus communis 30042.m000490 N 0.723
Glyma03g42540.1 Glycine max Glyma03g42540.1 N 0.714
cassava38202.valid.m1 Manihot esculenta cassava38202.valid.m1 N 0.707
cassava38201.valid.m1 Manihot esculenta cassava38201.valid.m1 N 0.706