CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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UREG_02113
(
Uncinocarpus reesii
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
UREG_02113
T31333_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
URET_02113
RRM
250
320
LFVCKLNPVTQDEDLNLIFSRFGPILSCEVIRDKRTGDSLQYAFIEFENQKDCEQAYFKMQGVLIDDHRIH
Links
Other
RRM
family RBPs
Other
Uncinocarpus reesii
RBPs
172 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ARB_00840
Arthroderma benhamiae
ARB_00840
N
0.000
BDBG_02675
Blastomyces dermatitidis
BDBG_02675
N
0.000
CHGG_08312
Chaetomium globosum
CHGG_08312
N
0.000
CIMG_06397
Coccidioides immitis
CIMG_06397
N
0.000
CPSG_00675
Coccidioides posadasii
CPSG_00675
N
0.000
estExt_fgenesh1_pg.C_80160
Trichoderma virens
estExt_fgenesh1_pg.C_80160
N
0.000
estExt_fgenesh1_pg.C_chr_80368
Mycosphaerella graminicola
estExt_fgenesh1_pg.C_chr_80368
N
0.000
estExt_fgenesh2_pm.C_60019
Thielavia terrestris
estExt_fgenesh2_pm.C_60019
N
0.000
estExt_Genewise1.C_110656
Neurospora discreta
estExt_Genewise1.C_110656
N
0.000
estExt_Genewise1Plus.C_570036
Neurospora tetrasperma
estExt_Genewise1Plus.C_570036
N
0.000
e_gw1.5.456.1
Mycosphaerella fijiensis
e_gw1.5.456.1
N
0.000
fgenesh1_pg.C_scaffold_2001068
Cryphonectria parasitica
fgenesh1_pg.C_scaffold_2001068
N
0.000
fgenesh1_pm.7_#_729
Myceliophthora thermophila
fgenesh1_pm.7_#_729
N
0.000
fgenesh1_pm.C_scaffold_19000008
Trichoderma atroviride
fgenesh1_pm.C_scaffold_19000008
N
0.000
fgenesh1_pm.C_scaffold_32000008
Trichoderma reesei
fgenesh1_pm.C_scaffold_32000008
N
0.000
fgenesh1_pm.sca_8_chr1_1_0000077
Nectria haematococca
fgenesh1_pm.sca_8_chr1_1_0000077
N
0.000
FGSG_01629
Fusarium graminearum
FGSG_01629
N
0.000
FOXG_11073
Fusarium oxysporum
FOXG_11073
N
0.000
FVEG_09726
Fusarium verticillioides
FVEG_09726
N
0.000
GLRG_06288
Colletotrichum graminicola
GLRG_06288
N
0.000
MCYG_02010
Microsporum canis
MCYG_02010
N
0.000
MGG_06218
Magnaporthe oryzae
MGG_06218
N
0.000
MGYG_04073
Microsporum gypseum
MGYG_04073
N
0.000
NCU05343
Neurospora crassa
NCU05343
N
0.000
PABG_00017
Paracoccidioides brasiliensis
PABG_00017
N
0.000
Pa_6_11740
Podospora anserina
Pa_6_11740
N
0.000
TEQG_06159
Trichophyton equinum
TEQG_06159
N
0.000
TERG_04408
Trichophyton rubrum
TERG_04408
N
0.000
TESG_06836
Trichophyton tonsurans
TESG_06836
N
0.000
TRV_07498
Trichophyton verrucosum
TRV_07498
N
0.000
UREG_04006
Uncinocarpus reesii
UREG_04006
N
0.000
VDAG_07628
Verticillium dahliae
VDAG_07628
N
0.000