CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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EDO07903.1
(
Babesia bovis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
EDO07903.1
T55966_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
EDO07903.1
RRM
52
122
LFVCKLNPVTEADDLKLIFSRFGPVVSCDVIRDYKTGDSLQYAFVEFESEDSCNDAYFRMQNVLIDDRRIH
Links
Other
RRM
family RBPs
Other
Babesia bovis
RBPs
131 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
TP03_0334
Theileria parva
TP03_0334
N
0.789
TA03990
Theileria annulata
TA03990
N
0.775
GI24038
Drosophila mojavensis
FBgn0146761
N
0.775
GA26948-RA
Drosophila pseudoobscura
FBgn0248319
N
0.775
GJ23668
Drosophila virilis
FBgn0210765
N
0.775
GL13859
Drosophila persimilis
FBgn0151464
N
0.775
GF18772
Drosophila ananassae
FBgn0095789
N
0.775
GH18460
Drosophila grimshawi
FBgn0125927
N
0.775
Aqu1.223583
Amphimedon queenslandica
Aqu1.223583
N
0.761
CHGG_06839
Chaetomium globosum
CHGG_06839
N
0.761
BGIBMGA008977
Bombyx mori
BGIBMGA008977
N
0.761
AGAP008136
Anopheles gambiae
AGAP008136
N
0.761
FOXG_13736
Fusarium oxysporum
FOXG_13736
N
0.746
GD18267
Drosophila simulans
FBgn0189800
N
0.746
FVEG_11166
Fusarium verticillioides
FVEG_11166
N
0.746
MGG_10681
Magnaporthe oryzae
MGG_10681
N
0.746
PHUM268300
Pediculus humanus
PHUM268300
N
0.746
CpipJ_CPIJ000912
Culex pipiens
CpipJ_CPIJ000912
N
0.746
GM23461
Drosophila sechellia
FBgn0178328
N
0.746
GG12319
Drosophila erecta
FBgn0104609
N
0.746
GE10772
Drosophila yakuba
FBgn0228614
N
0.746
CPIJ000912
Culex quinquefasciatus
CPIJ000912
N
0.746
CG5808
Drosophila melanogaster
FBgn0027617
N
0.746
nasonia_NCBI_hmm783174
Nasonia vitripennis
nasonia_NCBI_hmm783174
N
0.732
DGIL_AUG5s502g5t1
Acyrtosiphon pisum
DGIL_AUG5s502g5t1
N
0.732
fgenesh1_pm.C_scaffold_9000117
Mycosphaerella fijiensis
fgenesh1_pm.C_scaffold_9000117
N
0.732
GK13166
Drosophila willistoni
FBgn0215175
N
0.732
fgenesh1_pm.sca_11_chr8_3_0000173
Nectria haematococca
fgenesh1_pm.sca_11_chr8_3_0000173
N
0.732
ATEG_01850
Aspergillus terreus
CADATEAG00001841
N
0.732
PPIL4
Gallus gallus
ENSGALG00000012364
N
0.732
PPIL4
Tetraodon nigroviridis
ENSTNIG00000002706
N
0.732
PPIL4
Taeniopygia guttata
ENSTGUG00000010655
N
0.732
PPIL4
Meleagris gallopavo
ENSMGAG00000012596
N
0.732
ENSCSAVG00000010619
Ciona savignyi
ENSCSAVG00000010619
N
0.732
ENSCING00000006773
Ciona intestinalis
ENSCING00000006773
I
0.732
An12g00490
Aspergillus niger
CADANGAG00009498
N
0.732
ANIA_09095
Aspergillus nidulans
CADANIAG00009519
N
0.732
NFIA_114890
Neosartorya fischeri
CADNFIAG00010434
N
0.732
AFUA_7G02170
Aspergillus fumigatus
CADAFUAG00001177
N
0.732
NCU10166
Neurospora crassa
NCU10166
N
0.732
BDBG_04009
Blastomyces dermatitidis
BDBG_04009
N
0.732
ARB_04672
Arthroderma benhamiae
ARB_04672
N
0.732
CIMG_07762
Coccidioides immitis
CIMG_07762
N
0.732
CPSG_09333
Coccidioides posadasii
CPSG_09333
N
0.732
FGSG_04479
Fusarium graminearum
FGSG_04479
N
0.732
PMAA_010740
Penicillium marneffei
PMAA_010740
N
0.732
estExt_Genewise1Plus.C_12820
Neurospora discreta
estExt_Genewise1Plus.C_12820
N
0.732
estExt_fgenesh2_pm.C_1170007
Branchiostoma floridae
estExt_fgenesh2_pm.C_1170007
N
0.732
estExt_Genewise1Plus.C_61472
Cryphonectria parasitica
estExt_Genewise1Plus.C_61472
N
0.732
fgenesh1_pm.00868_#_101
Aspergillus carbonarius
fgenesh1_pm.00868_#_101
N
0.732
Pa_2_13850
Podospora anserina
Pa_2_13850
N
0.732
HCAG_04417
Histoplasma capsulatum
HCAG_04417
N
0.732
BC1G_10007
Botrytis cinerea
BC1G_10007
N
0.732
UREG_02113
Uncinocarpus reesii
UREG_02113
N
0.732
TRV_03115
Trichophyton verrucosum
TRV_03115
N
0.732
TEQG_07016
Trichophyton equinum
TEQG_07016
N
0.732
TERG_06028
Trichophyton rubrum
TERG_06028
N
0.732
gw1.1.256.1
Neurospora tetrasperma
gw1.1.256.1
N
0.732
MCYG_06073
Microsporum canis
MCYG_06073
N
0.732
MGYG_05886
Microsporum gypseum
MGYG_05886
N
0.732
PABG_01156
Paracoccidioides brasiliensis
PABG_01156
N
0.732
estExt_fgenesh3_pg.C_910016
Postia placenta
estExt_fgenesh3_pg.C_910016
N
0.718
PPIL4
Sorex araneus
ENSSARG00000011244
N
0.718
PPIL4
Pan troglodytes
ENSPTRG00000018692
N
0.718
PPIL4
Ochotona princeps
ENSOPRG00000005619
N
0.718
PPIL4
Procavia capensis
ENSPCAG00000008203
N
0.718
PPIL4
Pteropus vampyrus
ENSPVAG00000000746
N
0.718
Ppil4
Rattus norvegicus
ENSRNOG00000015552
N
0.718
PPIL4
Vicugna pacos
ENSVPAG00000005157
N
0.718
estExt_GeneWisePlus.C_270056
Trichoderma reesei
estExt_GeneWisePlus.C_270056
N
0.718
estExt_Genewise1Plus.C_chr_40303
Mycosphaerella graminicola
estExt_Genewise1Plus.C_chr_40303
N
0.718
PPIL4
Otolemur garnettii
ENSOGAG00000014153
N
0.718
cyp6
Schizosaccharomyces pombe
SPBC17G9.05
N
0.718
e_gw.42.57.1
Nematostella vectensis
e_gw.42.57.1
N
0.718
PPIL4
Tursiops truncatus
ENSTTRG00000006014
N
0.718
e_gw1.11.236.1
Trichoderma atroviride
e_gw1.11.236.1
N
0.718
PPIL4
Takifugu rubripes
ENSTRUG00000006670
N
0.718
PPIL4
Anolis carolinensis
ENSACAG00000006936
N
0.718
fgenesh1_pm.C_scaffold_3000471
Trichoderma virens
fgenesh1_pm.C_scaffold_3000471
N
0.718
VDBG_02138
Verticillium albo atrum
VDBG_02138
N
0.718
VDAG_02606
Verticillium dahliae
VDAG_02606
N
0.718
AAEL005541
Aedes aegypti
AAEL005541
N
0.718
AAEL005690
Aedes aegypti
AAEL005690
N
0.718
AFLA_071340
Aspergillus flavus
CADAFLAG00008558
N
0.718
ACLA_065360
Aspergillus clavatus
CADACLAG00006149
N
0.718
UM03490
Ustilago maydis
UM03490
N
0.718
SOCG_02586
Schizosaccharomyces octosporus
SOCG_02586
N
0.718
gwEuk.12.143.1
Ostreococcus lucimarinus
gwEuk.12.143.1
N
0.718
Ame_R008665
Ailuropoda melanoleuca
Ame_R008665
N
0.718
estExt_fgenesh2_kg.C_140159
Agaricus bisporus
estExt_fgenesh2_kg.C_140159
N
0.718
Pc21g11960
Penicillium chrysogenum
Pc21g11960
N
0.718
gw1.13.70.1
Lottia gigantea
gw1.13.70.1
N
0.718
SJAG_00470
Schizosaccharomyces japonicus
SJAG_00470
N
0.718
LOAG_08216
Loa loa
LOAG_08216
N
0.718
PPIL4
Oryctolagus cuniculus
ENSOCUG00000007696
N
0.718
AO090038000594
Aspergillus oryzae
CADAORAG00009343
N
0.718
PPIL4
Gorilla gorilla
ENSGGOG00000009686
N
0.718
Ppil4
Mus musculus
ENSMUSG00000015757
N
0.718
estExt_Genewise1.C_30053
Myceliophthora thermophila
estExt_Genewise1.C_30053
N
0.718
PPIL4
Loxodonta africana
ENSLAFG00000026804
N
0.718
PPIL4
Microcebus murinus
ENSMICG00000006287
N
0.718
PPIL4
Macaca mulatta
ENSMMUG00000023067
N
0.718
PPIL4
Myotis lucifugus
ENSMLUG00000002766
N
0.718
PPIL4
Homo sapiens
ENSG00000131013
N
0.718
e_gw1.4.2113.1
Pleurotus ostreatus
e_gw1.4.2113.1
N
0.718
Q6JDI1_CANFA
Canis familiaris
ENSCAFG00000000379
N
0.718
A6QP53_BOVIN
Bos taurus
ENSBTAG00000016980
N
0.718
PPIL4
Monodelphis domestica
ENSMODG00000016825
N
0.718
PPIL4
Cavia porcellus
ENSCPOG00000014614
N
0.718
PPIL4
Equus caballus
ENSECAG00000021819
N
0.718
ENSOANG00000001063
Ornithorhynchus anatinus
ENSOANG00000001063
N
0.718
PPIL4
Callithrix jacchus
ENSCJAG00000019613
N
0.708
fgeneshTA2_pg.C_scaffold_8000290
Trichoplax adhaerens
fgeneshTA2_pg.C_scaffold_8000290
N
0.704
fgenesh1_pm.C_scaffold_1000049
Schizophyllum commune
fgenesh1_pm.C_scaffold_1000049
N
0.704
EuGene.1200010297
Ostreococcus RCC809
EuGene.1200010297
N
0.704
PPIL4
Erinaceus europaeus
ENSEEUG00000000959
N
0.704
PTSG_07932
Salpingoeca rosetta
PTSG_07932
N
0.704
SPPG_03169
Spizellomyces punctatus
SPPG_03169
N
0.704
GLRG_06614
Colletotrichum graminicola
GLRG_06614
N
0.704
gw1.12.00.150.1
Ostreococcus tauri
gw1.12.00.150.1
N
0.704
estExt_Genewise1Plus.C_11662
Tremella mesenterica
estExt_Genewise1Plus.C_11662
N
0.704
GSTUMT00009813001
Tuber melanosporum
GSTUMT00009813001
N
0.704
WUBG_04730
Wuchereria bancrofti
WUBG_04730
N
0.704
amel4_ncbi_hmm11961
Apis mellifera
amel4_ncbi_hmm11961
N
0.704
83285
Helobdella robusta
83285
N
0.704
e_gw1.6.1078.1
Selaginella moellendorfii
e_gw1.6.1078.1
N
0.704
Chro.80276
Cryptosporidium hominis
Chro.80276
N
0.704
cgd8_2350
Cryptosporidium parvum
cgd8_2350
N
0.704
amel4_ncbi_hmm35613
Apis mellifera
amel4_ncbi_hmm35613
N
0.704
ppil4
Xenopus tropicalis
ENSXETG00000021385
N
0.704
estExt_Genewise1.C_23809
Thielavia terrestris
estExt_Genewise1.C_23809
N
0.704