CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CBN18184
(
Caenorhabditis brenneri
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
CBN18184
T34055_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CBN18184
RRM
64
134
LYIGDLHGDVTESMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDTMNFEIIHGRPMR
CBN18184
RRM
152
221
IFIKNLDRVIDNKSIYDTFSLFGNILSCKVATDDDGNSKGYGFVHFETEASAQTAIEKVNGMLLSDKKVF
CBN18184
RRM
245
314
VFVKNFGEHLDEAKLKEMFSKYGEINSAVVMTDAEGKPKGFGFVAYADPEAASKAVDDLNESILEGTELK
CBN18184
RRM
350
419
LYVKNIEEELTDEGLRAHFAQFGTITSAKVMVDENGRSKGFGFVCFEKPEEATAAVTEMNSKMIGAKPLY
Links
Other
RRM
family RBPs
Other
Caenorhabditis brenneri
RBPs
11 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Genemark.10526_g
Serpula lacrymans
Genemark.10526_g
N
0.000
Genemark.10975_g
Serpula lacrymans
Genemark.10975_g
N
0.000
Genemark.11049_g
Serpula lacrymans
Genemark.11049_g
N
0.000
Genemark.11813_g
Serpula lacrymans
Genemark.11813_g
N
0.000
Genemark.12016_g
Serpula lacrymans
Genemark.12016_g
N
0.000
Genemark.12122_g
Serpula lacrymans
Genemark.12122_g
N
0.000
Genemark.12199_g
Serpula lacrymans
Genemark.12199_g
N
0.000
Genemark.1877_g
Serpula lacrymans
Genemark.1877_g
N
0.000
Genemark.2320_g
Serpula lacrymans
Genemark.2320_g
N
0.000
Genemark.2652_g
Serpula lacrymans
Genemark.2652_g
N
0.000
Genemark.3014_g
Serpula lacrymans
Genemark.3014_g
N
0.000
Genemark.4399_g
Serpula lacrymans
Genemark.4399_g
N
0.000
Genemark.446_g
Serpula lacrymans
Genemark.446_g
N
0.000
Genemark.469_g
Serpula lacrymans
Genemark.469_g
N
0.000
Genemark.4749_g
Serpula lacrymans
Genemark.4749_g
N
0.000
Genemark.6054_g
Serpula lacrymans
Genemark.6054_g
N
0.000
Genemark.618_g
Serpula lacrymans
Genemark.618_g
N
0.000
Genemark.6548_g
Serpula lacrymans
Genemark.6548_g
N
0.000
Genemark.7257_g
Serpula lacrymans
Genemark.7257_g
N
0.000
Genemark.75_g
Serpula lacrymans
Genemark.75_g
N
0.000
Genemark.8022_g
Serpula lacrymans
Genemark.8022_g
N
0.000
Genemark.8882_g
Serpula lacrymans
Genemark.8882_g
N
0.000
Genemark.940_g
Serpula lacrymans
Genemark.940_g
N
0.000
Genemark.983_g
Serpula lacrymans
Genemark.983_g
N
0.000