pab-1 (Caenorhabditis elegans)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Y106G6H.2 T46307_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
pAbp
M130_0.6 		Drosophila melanogaster GAAAAHV RNAcompete
Ray et al.(2013)
RNCMPT00139 		0.701
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
Y106G6H.2a.1 RRM 34 104
Y106G6H.2a.1 RRM 122 191
Y106G6H.2a.1 RRM 215 283
Y106G6H.2a.1 RRM 319 388
Y106G6H.2a.2 RRM 34 104
Y106G6H.2a.2 RRM 122 191
Y106G6H.2a.2 RRM 215 283
Y106G6H.2a.2 RRM 319 388
Y106G6H.2a.3 RRM 34 104
Y106G6H.2a.3 RRM 122 191
Y106G6H.2a.3 RRM 215 283
Y106G6H.2a.3 RRM 319 388
Y106G6H.2a.4 RRM 34 104
Y106G6H.2a.4 RRM 122 191
Y106G6H.2a.4 RRM 215 283
Y106G6H.2a.4 RRM 319 388
Y106G6H.2b.1 RRM 59 128
Y106G6H.2b.1 RRM 152 220
Y106G6H.2b.1 RRM 256 325
Y106G6H.2b.2 RRM 59 128
Y106G6H.2b.2 RRM 152 220
Y106G6H.2b.2 RRM 256 325
Y106G6H.2c RRM 34 104
Y106G6H.2c RRM 155 223
Y106G6H.2c RRM 259 328

Links

Other RRM family RBPs
Other Caenorhabditis elegans RBPs

19 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CBN04295 Caenorhabditis brenneri CBN04295 I 0.932
CBG02207 Caenorhabditis briggsae CBG02207 N 0.929
CJA17800 Caenorhabditis japonica CJA17800 N 0.889
CBG07431 Caenorhabditis briggsae CBG07431 N 0.772
Bm1_06880 Brugia malayi Bm1_06880 I 0.765
Bm1_16080 Brugia malayi Bm1_16080 I 0.765
LOAG_01058 Loa loa LOAG_01058 I 0.765
CRE22405 Caenorhabditis remanei CRE22405 N 0.758
pab-2 Caenorhabditis elegans F18H3.3 N 0.751
CBN18184 Caenorhabditis brenneri CBN18184 N 0.751
CJA16600 Caenorhabditis japonica CJA16600 N 0.744
GE11925 Drosophila yakuba FBgn0229707 I 0.709
GG21846 Drosophila erecta FBgn0114024 I 0.709
GD11341 Drosophila simulans FBgn0183090 I 0.706
pAbp Drosophila melanogaster FBgn0261619 D 0.702
GM21847 Drosophila sechellia FBgn0176724 I 0.702
GH21052 Drosophila grimshawi FBgn0128514 I 0.702
AAEL010318 Aedes aegypti AAEL010318 I 0.702